Cryo-EM structure of a Legionella effector complexed with actin and AMP
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8jo3
Q-score: 0.618
Wang T, Song X, Tan J, Xian W, Zhou X, Yu M, Wang X, Xu Y, Wu T, Yuan K, Ran Y, Yang B, Fan G, Liu X, Zhou Y, Zhu Y
Nature (2024) 631 pp. 393-401 [ DOI: doi:10.1038/s41586-024-07573-z Pubmed: 38776962 ]
- Substrate of the dot/icm secretion system (50 kDa, Protein from Legionella sainthelensi)
- Adenosine monophosphate (347 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Actin, alpha skeletal muscle (42 kDa, Protein from Oryctolagus cuniculus)
- Calcium ion (40 Da, Ligand)
- Cryo-em structure of a legionella effector complexed with actin and amp (Complex from Legionella sainthelensi)
Cryo-EM structure of a Legionella effector complexed with actin and ATP
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8jo4
Q-score: 0.51
Wang T, Song X, Tan J, Xian W, Zhou X, Yu M, Wang X, Xu Y, Wu T, Yuan K, Ran Y, Yang B, Fan G, Liu X, Zhou Y, Zhu Y
Nature (2024) 631 pp. 393-401 [ DOI: doi:10.1038/s41586-024-07573-z Pubmed: 38776962 ]
- Cryo-em structure of a legionella effector complexed with actin and atp (Complex from Legionella sainthelensi)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Actin, alpha skeletal muscle (42 kDa, Protein from Oryctolagus cuniculus)
- Substrate of the dot/icm secretion system (50 kDa, Protein from Legionella sainthelensi)
- Calcium ion (40 Da, Ligand)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7wm0
Q-score: 0.295
Wang X, Chen X, Tan J, Yue S, Zhou R, Xu Y, Lin Y, Yang Y, Zhou Y, Deng K, Chen Z, Ye L, Zhu Y
Cell Host Microbe (2022) 30 pp. 887- [ DOI: doi:10.1016/j.chom.2022.03.035 ]
- Heavy chain of 35b5 fab (23 kDa, Protein from Homo sapiens)
- Light chain of 35b5 fab (25 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 spike glycoprotein and 35b5 fab (state2) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein (Complex from Homo sapiens)
- 35b5 fab (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of the Omicron S in complex with 35B5 Fab(1 down- and 2 up RBDs)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7wly
Q-score: 0.36
Wang X, Chen X, Tan J, Yue S, Zhou R, Xu Y, Lin Y, Yang Y, Zhou Y, Deng K, Chen Z, Ye L, Zhu Y
Cell Host Microbe (2022) 30 pp. 887- [ Pubmed: 35436443 DOI: doi:10.1016/j.chom.2022.03.035 ]
- Heavy chain of 35b5 fab (25 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 spike glycoprotein and 35b5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of 35b5 fab (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike glycoprotein (Complex from Homo sapiens)
- 35b5 fab (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of the Omicron S in complex with 35B5 Fab(1 down-, 1 up- and 1 invisible RBDs)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 7wlz
Q-score: 0.395
Wang X, Chen X, Tan J, Yue S, Zhou R, Xu Y, Lin Y, Yang Y, Zhou Y, Deng K, Chen Z, Ye L, Zhu Y
Cell Host Microbe (2022) 30 pp. 887- [ Pubmed: 35436443 DOI: doi:10.1016/j.chom.2022.03.035 ]
- Heavy chain of 35b5 fab (25 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 spike glycoprotein and 35b5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of 35b5 fab (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike glycoprotein (Complex from Homo sapiens)
- 35b5 fab (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of the flagellar LP ring from Salmonella
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7cbl
Q-score: 0.588
Tan J, Zhang X, Wang X, Xu C, Chang S, Wu H, Wang T, Liang H, Gao H, Zhou Y, Zhu Y
Cell (2021) 184 pp. 2665-2679.e19 [ DOI: doi:10.1016/j.cell.2021.03.057 Pubmed: 33882274 ]
- Flagellar hook-basal body (Complex from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Octanoic acid (caprylic acid) (144 Da, Ligand)
- Flagellar p-ring protein (38 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar l-ring protein (24 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Cryo-EM structure of the flagellar distal rod with partial hook from Salmonella
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7cbm
Q-score: 0.425
Tan J, Zhang X, Wang X, Xu C, Chang S, Wu H, Wang T, Liang H, Gao H, Zhou Y, Zhu Y
Cell (2021) 184 pp. 2665-2679.e19 [ DOI: doi:10.1016/j.cell.2021.03.057 Pubmed: 33882274 ]
- Flagellar hook protein flge (42 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar motor-hook complex (Complex from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
- Flagellar basal-body rod protein flgg (27 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar basal-body rod protein flgf (26 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Cryo-EM structure of the flagellar proximal rod with FliF peptides from Salmonella
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7cg0
Q-score: 0.45
Tan J, Zhang X, Wang X, Xu C, Chang S, Wu H, Wang T, Liang H, Gao H, Zhou Y, Zhu Y
Cell (2021) 184 pp. 2665-2679.e19 [ DOI: doi:10.1016/j.cell.2021.03.057 Pubmed: 33882274 ]
- Flagellar motor-hook complex (Complex from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar ms ring l1 (1 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar ms ring l2 (1 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar basal body rod protein flgb (15 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar basal-body rod protein flgc (13 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Cryo-EM structure of the flagellar export apparatus with FliE from Salmonella
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7cg4
Q-score: 0.417
Tan J, Zhang X, Wang X, Xu C, Chang S, Wu H, Wang T, Liang H, Gao H, Zhou Y, Zhu Y
Cell (2021) 184 pp. 2665-2679.e19 [ DOI: doi:10.1016/j.cell.2021.03.057 Pubmed: 33882274 ]
- Flagellar biosynthetic protein flip (26 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar hook-basal body complex protein flie (11 kDa, Protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
- Flagellar motor-hook complex (Complex from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)
Cryo-EM structure of the flagellar MS ring with C34 symmetry from Salmonella