CryoEM structure of GSDMB in complex with shigella IpaH7.8
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8efp
Q-score: 0.226
Wang C, Shivcharan S, Tian T, Wright S, Ma D, Chang J, Li K, Song K, Xu C, Rathinam VA, Ruan J
Nature (2023) 616 pp. 590-597 [ Pubmed: 36991122 DOI: doi:10.1038/s41586-023-05832-z ]
- Gsdmb-ipah7.8 (Complex)
- Gasdermin-b (47 kDa, Protein from Homo sapiens)
- Gasdermin-b (Complex from Homo sapiens)
- Probable e3 ubiquitin-protein ligase ipah7.8 (64 kDa, Protein from Shigella flexneri)
- E3 ubiquitin-protein ligase ipah7.8 (Complex from Shigella flexneri)
CryoEM structure of GSDMB pore without transmembrane beta-barrel
Resolution: 4.48 Å
EM Method: Single-particle
Fitted PDBs: 8et1
Q-score: 0.188
Wang C, Shivcharan S, Tian T, Wright S, Ma D, Chang J, Li K, Song K, Xu C, Rathinam VA, Ruan J
Nature (2023) 616 pp. 590-597 [ Pubmed: 36991122 DOI: doi:10.1038/s41586-023-05832-z ]
- Gsdmb-pore (Complex from Homo sapiens)
- Isoform 1 of gasdermin-b (46 kDa, Protein from Homo sapiens)
CryoEM structure of the GSDMB pore
Resolution: 4.96 Å
EM Method: Single-particle
Fitted PDBs: 8et2
Q-score: 0.118
Wang C, Shivcharan S, Tian T, Wright S, Ma D, Chang J, Li K, Song K, Xu C, Rathinam VA, Ruan J
Nature (2023) 616 pp. 590-597 [ Pubmed: 36991122 DOI: doi:10.1038/s41586-023-05832-z ]
- Gsdmb-pore (Complex from Homo sapiens)
- Isoform 1 of gasdermin-b (46 kDa, Protein from Homo sapiens)
Structure of human inner kinetochore CCAN-DNA complex
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7xhn
Q-score: 0.321
Tian T, Chen L, Dou Z, Yang Z, Gao X, Yuan X, Wang C, Liu R, Shen Z, Gui P, Teng M, Meng X, Hill DL, Li L, Zhang X, Liu X, Sun L, Zang J, Yao X
Cell Discov (2022) 8 pp. 90-90 [ Pubmed: 36085283 DOI: doi:10.1038/s41421-022-00439-6 ]
- Dna (25-mer) (7 kDa, DNA from Homo sapiens)
- Cenp-w (10 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Centromere protein n (40 kDa, Protein from Homo sapiens)
- Ccan-dna (Complex from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Centromere protein h (29 kDa, Protein from Homo sapiens)
- Centromere protein x (8 kDa, Protein from Homo sapiens)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein t (60 kDa, Protein from Homo sapiens)
- Dna (25-mer) (7 kDa, DNA from Homo sapiens)
- Centromere protein c (107 kDa, Protein from Homo sapiens)
- Centromere protein q (31 kDa, Protein from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
- Centromere protein s (15 kDa, Protein from Homo sapiens)
Structure of human inner kinetochore CCAN complex
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 7xho
Q-score: 0.366
Tian T, Chen L, Dou Z, Yang Z, Gao X, Yuan X, Wang C, Liu R, Shen Z, Gui P, Teng M, Meng X, Hill DL, Li L, Zhang X, Liu X, Sun L, Zang J, Yao X
Cell Discov (2022) 8 pp. 90-90 [ Pubmed: 36085283 DOI: doi:10.1038/s41421-022-00439-6 ]
- Centromere protein x (8 kDa, Protein from Homo sapiens)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Centromere protein t (60 kDa, Protein from Homo sapiens)
- Centromere protein h (28 kDa, Protein from Homo sapiens)
- Centromere protein c (107 kDa, Protein from Homo sapiens)
- Ccan (Complex from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Centromere protein q (30 kDa, Protein from Homo sapiens)
- Cenp-w (10 kDa, Protein from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Centromere protein s (15 kDa, Protein from Homo sapiens)
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein n (39 kDa, Protein from Homo sapiens)
Cryo-EM structure of a Q-engaged arrested complex
Resolution: 4.08 Å
EM Method: Single-particle
Fitted PDBs: 6jnx
Q-score: 0.35
Shi J, Gao X, Tian T, Yu Z, Gao B, Wen A, You L, Chang S, Zhang X, Zhang Y, Feng Y
Nat Commun (2019) 10 pp. 2925-2925 [ Pubmed: 31266960 DOI: doi:10.1038/s41467-019-10958-8 ]
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli K-12)
- Dna (63-mer) (19 kDa, DNA from Enterobacteria phage P21)
- Magnesium ion (24 Da, Ligand)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Dna (63-mer) (19 kDa, DNA from Enterobacteria phage P21)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Antiterminator q protein (18 kDa, Protein from Enterobacteria phage SfI)
- 21q-engaged arrested complex (Complex from Escherichia coli K-12)
- Rna (5'-r(p*ap*up*ap*ap*gp*gp*up*gp*gp*gp*gp*up*up*ap*gp*up*gp*a)-3') (5 kDa, RNA from Enterobacteria phage P21)
Cryo-EM structure of CENP-A nucleosome complexed with CENP-LN
Tian T, Li X, Liu Y, Wang C, Liu X, Bi G, Zhang X, Yao X, Zhou ZH, Zang J
Cell Res (2018) 28 pp. 374-378 [ Pubmed: 29350209 DOI: doi:10.1038/cr.2018.13 ]
- Histone h2b (Protein from Homo sapiens)
- Cenp-a ncp (Complex)
- Histone h2a (Protein from Homo sapiens)
- Centromere protein n (cenp-n) (Protein from Homo sapiens)
- Centromere protein l (cenp-l) (Protein from Homo sapiens)
- Histone h3-like centromeric protein a (cenp-a) (Protein from Homo sapiens)
- Histone h4 (Protein from Homo sapiens)
- Cenp-nl complex (Complex)
- Cenp-a ncp/cenp-ln complex (Complex from Homo sapiens)
- Dna (147-mer) (DNA from Homo sapiens)