Structure of the human endogenous PCNA-FEN1 complex - State A
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 8yjh
Q-score: 0.421
EMBO J (2025) 44 pp. 484-504 [ DOI: doi:10.1038/s44318-024-00296-x Pubmed: 39578540 ]
- Endogenous state a pcna-dna-fen1 complex (Complex from Homo sapiens)
- Proliferating cell nuclear antigen (28 kDa, Protein from Homo sapiens)
- Parent strand chain e (7 kDa, DNA from Homo sapiens)
- 5 prime dna (867 Da, DNA from Homo sapiens)
- Upstream dna chain j (4 kDa, DNA from Homo sapiens)
- Downstream dna chain f (3 kDa, DNA from Homo sapiens)
- Flap endonuclease 1 (42 kDa, Protein from Homo sapiens)
Structure of the human endogenous PCNA-FEN1 complex - State B
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 8yjl
Q-score: 0.448
EMBO J (2025) 44 pp. 484-504 [ DOI: doi:10.1038/s44318-024-00296-x Pubmed: 39578540 ]
- Endogenous state b pcna-dna-fen1 complex (Complex from Homo sapiens)
- Proliferating cell nuclear antigen (28 kDa, Protein from Homo sapiens)
- 5 prime dna (867 Da, DNA from Homo sapiens)
- Parent strand (8 kDa, DNA from Homo sapiens)
- Flap endonuclease 1 (42 kDa, Protein from Homo sapiens)
- Upstream dna (5 kDa, DNA from Homo sapiens)
- Downstream dna (3 kDa, DNA from Homo sapiens)
Structure of the human endogenous PCNA-FEN1 complex - State C
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 8yjq
Q-score: 0.441
EMBO J (2025) 44 pp. 484-504 [ DOI: doi:10.1038/s44318-024-00296-x Pubmed: 39578540 ]
- 5 prime flap dna (1 kDa, DNA from Homo sapiens)
- Proliferating cell nuclear antigen (28 kDa, Protein from Homo sapiens)
- Downstream dna (3 kDa, DNA from Homo sapiens)
- Flap endonuclease 1 (42 kDa, Protein from Homo sapiens)
- Endogenous state c pcna-dna-fen1 complex (Complex from Homo sapiens)
- Upstream dna (5 kDa, DNA from Homo sapiens)
- Parent strand (8 kDa, DNA from Homo sapiens)
Structure of the human endogenous PCNA-FEN1 complex - State D
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 8yjr
Q-score: 0.423
EMBO J (2025) 44 pp. 484-504 [ DOI: doi:10.1038/s44318-024-00296-x Pubmed: 39578540 ]
- Proliferating cell nuclear antigen (28 kDa, Protein from Homo sapiens)
- Parent dna (9 kDa, DNA from Homo sapiens)
- 5 prime flap dna (867 Da, DNA from Homo sapiens)
- Endogenous state d pcna-dna-fen1 complex (Complex from Homo sapiens)
- Flap endonuclease 1 (42 kDa, Protein from Homo sapiens)
- Downstream dna (3 kDa, DNA from Homo sapiens)
- Upstream dna (6 kDa, DNA from Homo sapiens)
Structure of the human endogenous PCNA-FEN1 complex - State E
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8yjs
Q-score: 0.443
EMBO J (2025) 44 pp. 484-504 [ DOI: doi:10.1038/s44318-024-00296-x Pubmed: 39578540 ]
- Proliferating cell nuclear antigen (28 kDa, Protein from Homo sapiens)
- Parent strand dna (8 kDa, DNA from Homo sapiens)
- Endogenous state e pcna-dna-fen1 complex (Complex from Homo sapiens)
- Downstream dna (3 kDa, DNA from Homo sapiens)
- 5 prime flap dna (867 Da, DNA from Homo sapiens)
- Flap endonuclease 1 (42 kDa, Protein from Homo sapiens)
- Upstream dna (5 kDa, DNA from Homo sapiens)
Structure of the human endogenous PCNA-FEN1 complex - State F
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 8yju
Q-score: 0.399
EMBO J (2025) 44 pp. 484-504 [ DOI: doi:10.1038/s44318-024-00296-x Pubmed: 39578540 ]
- Downstream dna (3 kDa, DNA from Homo sapiens)
- Proliferating cell nuclear antigen (28 kDa, Protein from Homo sapiens)
- 5 prime flap dna (867 Da, DNA from Homo sapiens)
- Flap endonuclease 1 (42 kDa, Protein from Homo sapiens)
- Parent strand dna (9 kDa, DNA from Homo sapiens)
- Endogenous state f pcna-dna-fen1 complex (Complex from Homo sapiens)
- Upstream dna (6 kDa, DNA from Homo sapiens)
Structure of the human endogenous PCNA-FEN1 complex - State G
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 8yjv
Q-score: 0.447
EMBO J (2025) 44 pp. 484-504 [ DOI: doi:10.1038/s44318-024-00296-x Pubmed: 39578540 ]
- Upstream dna (6 kDa, DNA from Homo sapiens)
- Parent strand dna (9 kDa, DNA from Homo sapiens)
- Proliferating cell nuclear antigen (28 kDa, Protein from Homo sapiens)
- 5 prime flap dna (867 Da, DNA from Homo sapiens)
- Flap endonuclease 1 (42 kDa, Protein from Homo sapiens)
- Downstream dna (3 kDa, DNA from Homo sa)
- Endogenous state g pcna-dna-fen1 complex (Complex from Homo sapiens)
Structure of the human endogenous PCNA-FEN1 complex - State H
EMBO J (2025) 44 pp. 484-504 [ DOI: doi:10.1038/s44318-024-00296-x Pubmed: 39578540 ]
- Flap endonuclease 1 (42 kDa, Protein from Homo sapiens)
- Parent strand dna (9 kDa, DNA from Homo sapiens)
- Upstream dna (6 kDa, DNA from Homo sapiens)
- Proliferating cell nuclear antigen (28 kDa, Protein from Homo sapiens)
- Downstream dna (3 kDa, DNA from Homo sapiens)
- 5 prime flap dna (867 Da, DNA from Homo sapiens)
- Endogenous state h pcna-dna-fen1 complex (Complex from Homo sapiens)
Structure of the human endogenous PCNA-FEN1-RNase H2 complex - State D
Resolution: 5.15 Å
EM Method: Single-particle
Fitted PDBs: 8yjz
Q-score: 0.302
EMBO J (2025) 44 pp. 484-504 [ DOI: doi:10.1038/s44318-024-00296-x Pubmed: 39578540 ]
- Endogenous state d pcna-dna-fen1-rnase h2 complex (Complex from Homo sapiens)
- Proliferating cell nuclear antigen (28 kDa, Protein from Homo sapiens)
- Parent strand dna (9 kDa, DNA from Homo sapiens)
- Ribonuclease h2 subunit c (17 kDa, Protein from Homo sapiens)
- Downstream dna (4 kDa, DNA from Homo sapiens)
- Flap endonuclease 1 (42 kDa, Protein from Homo sapiens)
- Upstream dna (6 kDa, DNA from Homo sapiens)
- Ribonuclease h2 subunit a (33 kDa, Protein from Homo sapiens)
- Ribonuclease h2 subunit b (35 kDa, Protein from Homo sapiens)
Cryo-EM structure of 5-subunit Smc5/6 arm region
Resolution: 5.97 Å
EM Method: Single-particle
Fitted PDBs: 8i4v
Q-score: 0.108
Li Q, Zhang J, Haluska C, Zhang X, Wang L, Liu G, Wang Z, Jin D, Cheng T, Wang H, Tian Y, Wang X, Sun L, Zhao X, Chen Z, Wang L
Nat Struct Mol Biol (2024) 31 pp. 1532-1542 [ DOI: doi:10.1038/s41594-024-01319-1 Pubmed: 38890552 ]
- Dna repair protein kre29 (7 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structural maintenance of chromosomes protein 6 (128 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structural maintenance of chromosomes protein 5 (123 kDa, Protein from Saccharomyces cerevisiae S288C)
- E3 sumo-protein ligase mms21 (28 kDa, Protein from Saccharomyces cerevisiae S288C)
- Cryo-em structure of 5-subunit smc5/6 arm region (Complex from Saccharomyces cerevisiae)