Structure of nucleosome-bound human BAF complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6ltj
Q-score: 0.007
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
Science (2020) 367 pp. 875-881 [ Pubmed: 32001526 DOI: doi:10.1126/science.aaz9761 ]
- Baf (Complex from Homo sapiens)
- Nucleosome (Complex from Xenopus calcaratus)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily d member 1 (58 kDa, Protein from Homo sapiens)
- Actin-like protein 6a (45 kDa, Protein from Homo sapiens)
- Actin, cytoplasmic 1 (41 kDa, Protein from Homo sapiens)
- Transcription activator brg1 (184 kDa, Protein from Homo sapiens)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily b member 1 (38 kDa, Protein from Homo sapiens)
- Swi/snf complex subunit smarcc2 (133 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Histone h3.3 (15 kDa, Protein from Xenopus laevis)
- Dna (119-mer) (36 kDa, DNA from Homo sapiens)
- Dna (119-mer) (36 kDa, DNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Structure of nucleosome-bound human baf complex (Complex)
- Zinc finger protein ubi-d4 (32 kDa, Protein from Homo sapiens)
- At-rich interactive domain-containing protein 1a (142 kDa, Protein from Homo sapiens)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily e member 1 (46 kDa, Protein from Homo sapiens)
Structure of Snf2-nucleosome complex at shl2 in ADP BeFx state
Resolution: 4.31 Å
EM Method: Single-particle
Fitted PDBs: 5z3u
Q-score: 0.372
Li M, Xia X, Tian Y, Jia Q, Liu X, Lu Y, Li M, Li X, Chen Z
Nature (2019) 567 pp. 409-413 [ DOI: doi:10.1038/s41586-019-1029-2 Pubmed: 30867599 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Transcription regulatory protein snf2 (85 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Complex of snf2 and nucleosome in adp befx state (300 kDa, Complex from Xenopus laevis)
- Magnesium ion (24 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
Structure of Snf2-nucleosome complex at shl-2 in ADP BeFx state
Resolution: 4.22 Å
EM Method: Single-particle
Fitted PDBs: 5z3v
Q-score: 0.356
Li M, Xia X, Tian Y, Jia Q, Liu X, Lu Y, Li M, Li X, Chen Z
Nature (2019) 567 pp. 409-413 [ DOI: doi:10.1038/s41586-019-1029-2 Pubmed: 30867599 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Complex of snf2 and nucleosome in adp befx state (300 kDa, Complex from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Transcription regulatory protein snf2 (85 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
Structure of Snf2-nucleosome complex in apo state
Resolution: 4.31 Å
EM Method: Single-particle
Fitted PDBs: 5z3l
Q-score: 0.261
Li M, Xia X, Tian Y, Jia Q, Liu X, Lu Y, Li M, Li X, Chen Z
Nature (2019) 567 pp. 409-413 [ DOI: doi:10.1038/s41586-019-1029-2 Pubmed: 30867599 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Complex of snf2 and nucleosome in apo state (300 kDa, Complex from Xenopus laevis)
- Transcription regulatory protein snf2 (85 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
Structure of Snf2-nucleosome complex in ADP state
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 5z3o
Q-score: 0.349
Li M, Xia X, Tian Y, Jia Q, Liu X, Lu Y, Li M, Li X, Chen Z
Nature (2019) 567 pp. 409-413 [ DOI: doi:10.1038/s41586-019-1029-2 Pubmed: 30867599 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Complex of snf2 and nucleosome in adp state (300 kDa, Complex from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Magnesium ion (24 Da, Ligand)
- Transcription regulatory protein snf2 (85 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
Structure of Snf2-MMTV-A nucleosome complex at shl2 in ADP state
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 6iy2
Q-score: 0.427
Li M, Xia X, Tian Y, Jia Q, Liu X, Lu Y, Li M, Li X, Chen Z
Nature (2019) 567 pp. 409-413 [ DOI: doi:10.1038/s41586-019-1029-2 Pubmed: 30867599 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transcription regulatory protein snf2 (79 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Structure of snf2-mmtv-a nucleosome complex at shl2 in adp state (300 kDa, Complex from Xenopus laevis)
- Histone h3 (11 kDa, Protein from Xenopus laevis)
- Histone h2a (12 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (44 kDa, DNA from Mus musculus)
- Histone h2b (11 kDa, Protein from Xenopus laevis)
- Dna (147-mer) (45 kDa, DNA from Mus musculus)
- Histone h4 (10 kDa, Protein from Xenopus laevis)