Structure of the human INTS9-INTS11-BRAT1 complex
Lin MH, Jensen MK, Elrod ND, Chu HF, Haseley M, Beam AC, Huang KL, Chiang W, Russell WK, Williams K, Proschel C, Wagner EJ, Tong L
Mol Cell (2024) 84 pp. 2900-2917.e10 [ DOI: doi:10.1016/j.molcel.2024.06.017 Pubmed: 39032490 ]
- Integrator complex subunit 9 (73 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Integrator complex subunit 11 (67 kDa, Protein from Homo sapiens)
- Brca1-associated atm activator 1 (88 kDa, Protein from Homo sapiens)
- Complex of brat1-ints9-ints11 (230 kDa, Complex from Homo sapiens)
Structure of the Drosophila IntS11-CG7044(dBRAT1) complex
Lin MH, Jensen MK, Elrod ND, Chu HF, Haseley M, Beam AC, Huang KL, Chiang W, Russell WK, Williams K, Proschel C, Wagner EJ, Tong L
Mol Cell (2024) 84 pp. 2900-2917.e10 [ DOI: doi:10.1016/j.molcel.2024.06.017 Pubmed: 39032490 ]
- Integrator complex subunit 11 (67 kDa, Protein from Drosophila melanogaster)
- Complex of drosophila ints11 and cg7044 (180 kDa, Complex from Drosophila melanogaster)
- Fi02071p (113 kDa, Protein from Drosophila melanogaster)
- Zinc ion (65 Da, Ligand)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8gk7
Q-score: 0.364
Wang H, Ishchenko A, Skudlarek J, Shen P, Dzhekieva L, Painter RE, Chen YT, Bukhtiyarova M, Leithead A, Tracy R, Babaoglu K, Bahnck-Teets C, Buevich A, Cabalu TD, Labroli M, Lange H, Lei Y, Li W, Liu J, Mann PA, Meng T, Mitchell HJ, Mulhearn J, Scapin G, Sha D, Shaw AW, Si Q, Tong L, Wu C, Wu Z, Xiao JC, Xu M, Zhang LK, McKenney D, Miller RR, Black TA, Cooke A, Balibar CJ, Klein DJ, Raheem I, Walker SS
Nat Microbiol (2024) 9 pp. 1244-1255 [ DOI: doi:10.1038/s41564-024-01667-0 Pubmed: 38649414 ]
- Msba complexed with cerastecin c (450 kDa, Complex from Acinetobacter baumannii)
- Lipid a export atp-binding/permease protein msba (66 kDa, Protein from Acinetobacter baumannii)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- 2-[(4-butylbenzene-1-sulfonyl)amino]-5-[(3-{4-[(4-butylbenzene-1-sulfonyl)amino]-3-carboxyanilino}-3-oxopropyl)carbamoyl]benzoic acid (778 Da, Ligand)
Structure of the methylosome-Lsm10/11 complex
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8g1u
Q-score: 0.609
Yang XC, Desotell A, Lin MH, Paige AS, Malinowska A, Sun Y, Aik WS, Dadlez M, Tong L, Dominski Z
RNA (2023) 29 pp. 1673-1690 [ DOI: doi:10.1261/rna.079709.123 Pubmed: 37562960 ]
- Methylosome protein 50 (36 kDa, Protein from Homo sapiens)
- U7 snrna-associated sm-like protein lsm11 (39 kDa, Protein from Homo sapiens)
- Adenosine (267 Da, Ligand)
- Methylosome (Complex from Homo sapiens)
- Protein arginine n-methyltransferase 5 (72 kDa, Protein from Homo sapiens)
- Methylosome subunit picln (26 kDa, Protein from Mus musculus)
SARS-CoV-2 S ectodomain trimer in complex with neutralizing antibody 10-5B
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7xd2
Q-score: 0.367
Liu Y, Wang Z, Zhuang X, Zhang S, Chen Z, Zou Y, Sheng J, Li T, Tai W, Yu J, Wang Y, Zhang Z, Chen Y, Tong L, Yu X, Wu L, Chen D, Zhang R, Jin N, Shen W, Zhao J, Tian M, Wang X, Cheng G
Nat Commun (2023) 14 pp. 2179-2179 [ Pubmed: 37069158 DOI: doi:10.1038/s41467-023-37926-7 ]
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- L chian of antibody 10-5b (11 kDa, Protein from Homo sapiens)
- H chain of antibody 10-5b (12 kDa, Protein from Homo sapiens)
- Spike+antibody (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 BA.4 variants S ectodomain trimer in complex with neutralizing antibody 10-5B and 6-2C
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8h07
Q-score: 0.298
Liu Y, Wang Z, Zhuang X, Zhang S, Chen Z, Zou Y, Sheng J, Li T, Tai W, Yu J, Wang Y, Zhang Z, Chen Y, Tong L, Yu X, Wu L, Chen D, Zhang R, Jin N, Shen W, Zhao J, Tian M, Wang X, Cheng G
Nat Commun (2023) 14 pp. 2179-2179 [ Pubmed: 37069158 DOI: doi:10.1038/s41467-023-37926-7 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 10-5b h chain (12 kDa, Protein from Homo sapiens)
- 10-5b l chain (11 kDa, Protein from Homo sapiens)
- 6-2c l chain (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 ba.4 variants spike (Cellular component from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 ba.4 variants spike (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 6-2c h chain (13 kDa, Protein from Homo sapiens)
- Antibody (Cellular component from Homo sapiens)
SARS-CoV-2 BA.1 variants S ectodomain trimer in complex with neutralizing antibody 10-5B and 6-2C
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8h08
Q-score: 0.3
Liu Y, Wang Z, Zhuang X, Zhang S, Chen Z, Zou Y, Sheng J, Li T, Tai W, Yu J, Wang Y, Zhang Z, Chen Y, Tong L, Yu X, Wu L, Chen D, Zhang R, Jin N, Shen W, Zhao J, Tian M, Wang X, Cheng G
Nat Commun (2023) 14 pp. 2179-2179 [ Pubmed: 37069158 DOI: doi:10.1038/s41467-023-37926-7 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 10-5b h chain (12 kDa, Protein from Homo sapiens)
- 10-5b l chain (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 ba.1 variants spike (Cellular component from Severe acute respiratory syndrome coronavirus 2)
- 6-2c l chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (144 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 6-2c h chain (13 kDa, Protein from Homo sapiens)
- Sars-cov-2 ba.1 variants spike (Complex)
- Antibody (Cellular component from Homo sapiens)
CRYO-EM STRUCTURE OF the human MPSF IN COMPLEX WITH THE AUUAAA poly(A) signal
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 8e3i
Q-score: 0.632
Gutierrez PA, Wei J, Sun Y, Tong L
RNA (2022) 28 pp. 1534-1541 [ Pubmed: 36130077 DOI: doi:10.1261/rna.079322.122 ]
- Zinc ion (65 Da, Ligand)
- Cleavage and polyadenylation specificity factor subunit 4 (27 kDa, Protein from Homo sapiens)
- Rna (5'-r(p*cp*ap*up*up*ap*ap*ap*cp*ap*ap*c)-3') (3 kDa, RNA from Homo sapiens)
- Human mpsf-auuaaa rna complex (Complex from Homo sapiens)
- Pre-mrna 3' end processing protein wdr33 (65 kDa, Protein from Homo sapiens)
- Cleavage and polyadenylation specificity factor subunit 1 (161 kDa, Protein from Homo sapiens)
CRYO-EM STRUCTURE OF the human MPSF
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8e3q
Q-score: 0.588
Gutierrez PA, Wei J, Sun Y, Tong L
RNA (2022) 28 pp. 1534-1541 [ Pubmed: 36130077 DOI: doi:10.1261/rna.079322.122 ]
- Zinc ion (65 Da, Ligand)
- Cleavage and polyadenylation specificity factor subunit 4 (27 kDa, Protein from Homo sapiens)
- Pre-mrna 3' end processing protein wdr33 (65 kDa, Protein from Homo sapiens)
- Cleavage and polyadenylation specificity factor subunit 1 (161 kDa, Protein from Homo sapiens)
- Human mpsf (Complex from Homo sapiens)
Cryo-EM structure of "CT-CT dimer" of Lactococcus lactis pyruvate carboxylase with acetyl-CoA
Resolution: 2.15 Å
EM Method: Single-particle
Fitted PDBs: 7zz6
Q-score: 0.676
Lopez-Alonso JP, Lazaro M, Gil-Carton D, Choi PH, Dodu A, Tong L, Valle M
Nat Commun (2022) 13 pp. 6185-6185 [ Pubmed: 36261450 DOI: doi:10.1038/s41467-022-33987-2 ]
- Pyruvate carboxylase (127 kDa, Protein from Lactococcus lactis)
- Pyruvic acid (88 Da, Ligand)
- Pyruvate carboxylase with acetyl coenzyme a (Cellular component from Lactococcus lactis)
- Magnesium ion (24 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
- Water (18 Da, Ligand)