Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8vkk
Q-score: 0.439
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 2)
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8vkl
Q-score: 0.331
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 xbb.1.5 spike protein trimer bound to 2 mouse ace2 molecules (Complex from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 1)
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8vkm
Q-score: 0.371
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 xbb.1.5 spike protein trimer bound to mouse ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8vkn
Q-score: 0.513
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
- Sars-cov-2 xbb.1.5 spike protein rbd bound to mouse ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with human ACE2
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8vko
Q-score: 0.26
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 xbb.1.5 spike protein trimer bound to 3 human ace2 molecules (Complex from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8vkp
Q-score: 0.519
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 xbb.1.5 spike protein trimer bound to 3 human ace2 molecules (Complex from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 8sen
Q-score: 0.338
Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Alvarado FJ, Van Petegem F, Subramaniam S
Structure (2023) 31 pp. 790-800.e4 [ DOI: doi:10.1016/j.str.2023.04.009 Pubmed: 37192614 ]
- Ryr1 in complex with fkbp12.6 (Complex from Oryctolagus cuniculus)
- Ryanodine receptor 1 (565 kDa, Protein from Oryctolagus cuniculus)
- Glutathione s-transferase class-mu 26 kda isozyme,peptidyl-prolyl cis-trans isomerase fkbp1b (40 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Cryo-EM Structure of RyR1 + ATP-gamma-S
Resolution: 3.92 Å
EM Method: Single-particle
Fitted PDBs: 8seo
Q-score: 0.253
Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Alvarado FJ, Van Petegem F, Subramaniam S
Structure (2023) 31 pp. 790-800.e4 [ DOI: doi:10.1016/j.str.2023.04.009 Pubmed: 37192614 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ryr1 in complex with fkbp12.6 (Complex from Oryctolagus cuniculus)
- Ryanodine receptor 1 (565 kDa, Protein from Oryctolagus cuniculus)
- Glutathione s-transferase class-mu 26 kda isozyme,peptidyl-prolyl cis-trans isomerase fkbp1b (40 kDa, Protein from Homo sapiens)
Cryo-EM Structure of RyR1 + ADP
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 8sep
Q-score: 0.289
Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Alvarado FJ, Van Petegem F, Subramaniam S
Structure (2023) 31 pp. 790-800.e4 [ DOI: doi:10.1016/j.str.2023.04.009 Pubmed: 37192614 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ryr1 in complex with fkbp12.6 (Complex from Oryctolagus cuniculus)
- Ryanodine receptor 1 (565 kDa, Protein from Oryctolagus cuniculus)
- Glutathione s-transferase class-mu 26 kda isozyme,peptidyl-prolyl cis-trans isomerase fkbp1b (40 kDa, Protein from Homo sapiens)