Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with human ACE2
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8dm5
Q-score: 0.312
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron ba.2 spike protein in complex with human ace2 (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Human ace2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8dm6
Q-score: 0.514
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron ba.2 spike protein in complex with human ace2 (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Human ace2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with mouse ACE2
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8dm7
Q-score: 0.327
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Sars-cov-2 omicron ba.2 spike protein in complex with mouse ace2 (Complex)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Mouse ace2 (Complex from Mus musculus)
- Sars-cov-2 omicron ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8dm8
Q-score: 0.544
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Sars-cov-2 omicron ba.2 spike protein in complex with mouse ace2 (Complex)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Mouse ace2 (Complex from Mus musculus)
- Sars-cov-2 omicron ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 8dm9
Q-score: 0.367
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Sars-cov-2 omicron ba.1 spike protein in complex with mouse ace2 (Complex)
- Mouse ace2 (Complex from Mus musculus)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8dma
Q-score: 0.537
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Sars-cov-2 omicron ba.1 spike protein in complex with mouse ace2 (Complex)
- Mouse ace2 (Complex from Mus musculus)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8dm1
Q-score: 0.365
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein (focused refinement of NTD)
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8dm2
Q-score: 0.419
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with Fab 4A8
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8dm3
Q-score: 0.384
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Fab 4a8 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab 4a8 light chain (25 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab 4a8 heavy chain (27 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron ba.2 spike protein in complex with fab 4a8 (Complex)
Resolution: 2.45 Å
EM Method: Single-particle
Fitted PDBs: 8dm4
Q-score: 0.551
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Fab 4a8 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab 4a8 light chain (25 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab 4a8 heavy chain (27 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron ba.2 spike protein in complex with fab 4a8 (Complex)