Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 2)
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8vkl
Q-score: 0.331
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 xbb.1.5 spike protein trimer bound to 2 mouse ace2 molecules (Complex from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 1)
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8vkm
Q-score: 0.371
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 xbb.1.5 spike protein trimer bound to mouse ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8vkn
Q-score: 0.513
Mannar D, Saville JW, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle KS, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
Nat Commun (2024) 15 pp. 1854-1854 [ Pubmed: 38424106 DOI: doi:10.1038/s41467-024-46104-2 ]
- Sars-cov-2 xbb.1.5 spike protein rbd bound to mouse ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with mouse ACE2
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8dm7
Q-score: 0.327
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Sars-cov-2 omicron ba.2 spike protein in complex with mouse ace2 (Complex)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Mouse ace2 (Complex from Mus musculus)
- Sars-cov-2 omicron ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8dm8
Q-score: 0.544
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Sars-cov-2 omicron ba.2 spike protein in complex with mouse ace2 (Complex)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Mouse ace2 (Complex from Mus musculus)
- Sars-cov-2 omicron ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 8dm9
Q-score: 0.367
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Sars-cov-2 omicron ba.1 spike protein in complex with mouse ace2 (Complex)
- Mouse ace2 (Complex from Mus musculus)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8dma
Q-score: 0.537
Saville JW, Mannar D, Zhu X, Berezuk AM, Cholak S, Tuttle KS, Vahdatihassani F, Subramaniam S
Cell Rep (2023) 42 pp. 111964-111964 [ Pubmed: 36640338 DOI: doi:10.1016/j.celrep.2022.111964 ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Sars-cov-2 omicron ba.1 spike protein in complex with mouse ace2 (Complex)
- Mouse ace2 (Complex from Mus musculus)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron ba.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)