Class1 of the INO80-Hexasome complex
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8ets
Q-score: 0.473
Wu H, Munoz EN, Hsieh LJ, Chio US, Gourdet MA, Narlikar GJ, Cheng Y
Science (2023) 381 pp. 319-324 [ DOI: doi:10.1126/science.adf4197 Pubmed: 37384669 ]
- Actin-related protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ino eighty subunit 2 (3 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 1 (48 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chromatin-remodeling atpase ino80 (54 kDa, Protein from Saccharomyces cerevisiae S288C)
- Chromatin-remodeling complex subunit ies6 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 2 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ino80-hex (Complex from Saccharomyces cerevisiae)
Class2 of the INO80-Hexasome complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8etu
Q-score: 0.512
Wu H, Munoz EN, Hsieh LJ, Chio US, Gourdet MA, Narlikar GJ, Cheng Y
Science (2023) 381 pp. 319-324 [ DOI: doi:10.1126/science.adf4197 Pubmed: 37384669 ]
- Actin-related protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ino eighty subunit 2 (3 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 1 (48 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chromatin-remodeling atpase ino80 (54 kDa, Protein from Saccharomyces cerevisiae S288C)
- Chromatin-remodeling complex subunit ies6 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 2 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ino80-hex (Complex from Saccharomyces cerevisiae)
Class3 of INO80-Hexasome complex
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8etw
Q-score: 0.542
Wu H, Munoz EN, Hsieh LJ, Chio US, Gourdet MA, Narlikar GJ, Cheng Y
Science (2023) 381 pp. 319-324 [ DOI: doi:10.1126/science.adf4197 Pubmed: 37384669 ]
- Actin-related protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ino eighty subunit 2 (3 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 1 (48 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chromatin-remodeling atpase ino80 (54 kDa, Protein from Saccharomyces cerevisiae S288C)
- Chromatin-remodeling complex subunit ies6 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 2 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ino80-hex (Complex from Saccharomyces cerevisiae)
Class1 of the INO80-Nucleosome complex
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8eu9
Q-score: 0.368
Wu H, Munoz EN, Hsieh LJ, Chio US, Gourdet MA, Narlikar GJ, Cheng Y
Science (2023) 381 pp. 319-324 [ DOI: doi:10.1126/science.adf4197 Pubmed: 37384669 ]
- Chromatin-remodeling atpase ino80 (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ruvb-like protein 1 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ino eighty subunit 2 (3 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin-related protein 5 (87 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ino80-ncp (Complex from Saccharomyces cerevisiae)
- Ruvb-like protein 2 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin-remodeling complex subunit ies6 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Class2 of the INO80-Nucleosome complex
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8euf
Q-score: 0.347
Wu H, Munoz EN, Hsieh LJ, Chio US, Gourdet MA, Narlikar GJ, Cheng Y
Science (2023) 381 pp. 319-324 [ DOI: doi:10.1126/science.adf4197 Pubmed: 37384669 ]
- Actin-related protein 5 (87 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Ino80-ncp (Complex from Saccharomyces cerevisiae)
- Chromatin-remodeling atpase ino80 (171 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 1 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 2 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Chromatin-remodeling complex subunit ies6 (18 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ino eighty subunit 2 (36 kDa, Protein from Saccharomyces cerevisiae S288C)
The crosslinked complex of ISWI-nucleosome in the ADP.BeF-bound state
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6jyl
Q-score: 0.452
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, Protein from Escherichia coli K-12)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Iswi (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Iswi-nucleosome-crosslinked (300 kDa, Complex)
- Nucleosome (Complex from Xenopus laevis)
- Dna (Complex from Escherichia coli K-12)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
The complex of ISWI-nucleosome in the ADP.BeF-bound state
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 6k1p
Q-score: 0.42
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Isw1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- The complex of iswi-nucleosome in the adp-bef-bound state (300 kDa, Complex)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Nuleosome (Complex from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Dna (Complex from Escherichia coli K-12)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
the crosslinked complex of ISWI-nucleosome in the ADP-bound state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6iro
Q-score: 0.435
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Isw1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone octamer (Complex from Xenopus laevis)
- The crosslinked complex of iswi-nucleosome in the adp-bound state (Complex)
- Dna (Complex from Escherichia coli K-12)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)