Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9j1w
Q-score: 0.543
Cryo-EM structure of the unliganded form of NLR family apoptosis inhibitory protein 5 (NAIP5)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7rav
Q-score: 0.347
Paidimuddala B, Cao J, Nash G, Xie Q, Wu H, Zhang L
Nat Struct Mol Biol (2023) 30 pp. 159-166 [ Pubmed: 36604500 DOI: doi:10.1038/s41594-022-00889-2 ]
- Baculoviral iap repeat-containing protein 1e (161 kDa, Protein from Mus musculus)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Pre-liganded form of naip5 (Cell from Mus musculus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8e4y
Q-score: 0.502
Johnson ZL, Ammirati M, Wasilko DJ, Chang JS, Noell S, Foley TL, Yoon H, Smith K, Asano S, Hales K, Wan M, Yang Q, Piotrowski MA, Farley KA, Gilbert T, Aschenbrenner LM, Fennell KF, Dutra JK, Xu M, Guo C, Varghese AE, Bellenger J, Quinn A, Am Ende CW, West GM, Griffor MC, Bennett D, Calabrese M, Steppan CM, Han S, Wu H
Nat Struct Mol Biol (2023) 30 pp. 22-30 [ Pubmed: 36522428 DOI: doi:10.1038/s41594-022-00884-7 ]
- [(2r,3s,4r,5r)-5-(6-amino-9h-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl (3r)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-({2-[(2-oxohexadecyl)sulfanyl]ethyl}amino)propyl]amino}butyl dihydrogen diphosphate (non-preferred name) (1 kDa, Ligand)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl hexadecanoate (410 Da, Ligand)
- Glycerol-3-phosphate acyltransferase 1, mitochondrial (86 kDa, Protein from Homo sapiens)
- Glycerol-3-phosphate acyltransferase 1 (86 kDa, Complex from Homo sapiens)
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 8e50
Q-score: 0.444
Johnson ZL, Ammirati M, Wasilko DJ, Chang JS, Noell S, Foley TL, Yoon H, Smith K, Asano S, Hales K, Wan M, Yang Q, Piotrowski MA, Farley KA, Gilbert T, Aschenbrenner LM, Fennell KF, Dutra JK, Xu M, Guo C, Varghese AE, Bellenger J, Quinn A, Am Ende CW, West GM, Griffor MC, Bennett D, Calabrese M, Steppan CM, Han S, Wu H
Nat Struct Mol Biol (2023) 30 pp. 22-30 [ Pubmed: 36522428 DOI: doi:10.1038/s41594-022-00884-7 ]
- Coenzyme a (767 Da, Ligand)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl hexadecanoate (410 Da, Ligand)
- Glycerol-3-phosphate acyltransferase 1, mitochondrial (86 kDa, Protein from Homo sapiens)
- Glycerol-3-phosphate acyltransferase 1 (86 kDa, Complex from Homo sapiens)
Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8cth
Q-score: 0.375
Li J, Wang L, Hahn Q, Nowak RP, Viennet T, Orellana EA, Roy Burman SS, Yue H, Hunkeler M, Fontana P, Wu H, Arthanari H, Fischer ES, Gregory RI
Nature (2023) 613 pp. 391-397 [ Pubmed: 36599985 DOI: doi:10.1038/s41586-022-05566-4 ]
- Mettl1-wdr4-trna_phe complex (Complex)
- Trna (guanine-n(7)-)-methyltransferase non-catalytic subunit wdr4 (47 kDa, Protein from Homo sapiens)
- Trna (guanine-n(7)-)-methyltransferase (31 kDa, Protein from Homo sapiens)
- Mettl1-wdr4 (Complex from Homo sapiens)
- Trna_phenylalanine specific (Cellular component from Saccharomyces cerevisiae)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Phe-trna (24 kDa, RNA from Saccharomyces cerevisiae)
Cryo-EM structure of human METTL1-WDR4-tRNA(Val) complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8cti
Q-score: 0.294
Li J, Wang L, Hahn Q, Nowak RP, Viennet T, Orellana EA, Roy Burman SS, Yue H, Hunkeler M, Fontana P, Wu H, Arthanari H, Fischer ES, Gregory RI
Nature (2023) 613 pp. 391-397 [ Pubmed: 36599985 DOI: doi:10.1038/s41586-022-05566-4 ]
- Trna-val-tac-2-1 (23 kDa, RNA from Homo sapiens)
- Trna (guanine-n(7)-)-methyltransferase non-catalytic subunit wdr4 (47 kDa, Protein from Homo sapiens)
- Trna (guanine-n(7)-)-methyltransferase (31 kDa, Protein from Homo sapiens)
- Trna (guanine-n(7)-)-methyltransferase, trna (guanine-n(7)-)-methyltransferase non-catalytic subunit wdr4 (Complex from Homo sapiens)
- Mettl1-wdr4-trna_val (Complex)
- Rna (Complex)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7v6y
Q-score: 0.448
Luo Y, Wan G, Zhang X, Zhou X, Wang Q, Fan J, Cai H, Ma L, Wu H, Qu Q, Cong Y, Zhao Y, Li D
Structure (2021) 29 pp. 1286- [ Pubmed: 34174188 DOI: doi:10.1016/j.str.2021.06.004 ]
- Cholesterol (386 Da, Ligand)
- Protein patched homolog 1,protein patched homolog 1 (121 kDa, Protein from Mus musculus)
- Ptc1 in lipid nanodisc (160 MDa, Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- (2s)-2-azanyl-3-[[(2s)-3-butanoyloxy-2-dec-9-enoyloxy-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid (481 Da, Ligand)
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 7v6z
Q-score: 0.392
Luo Y, Wan G, Zhang X, Zhou X, Wang Q, Fan J, Cai H, Ma L, Wu H, Qu Q, Cong Y, Zhao Y, Li D
Structure (2021) 29 pp. 1286- [ Pubmed: 34174188 DOI: doi:10.1016/j.str.2021.06.004 ]
- Cholesterol (386 Da, Ligand)
- Ptc1 in lipid nanodisc (160 MDa, Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Protein patched homolog 1,protein patched homolog 1 (121 kDa, Protein from Mus musculus)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7jkq
Q-score: 0.434
Sharif H, Hollingsworth LR, Griswold AR, Hsiao JC, Wang Q, Bachovchin DA, Wu H
Immunity (2021) 54 pp. 1392- [ DOI: doi:10.1016/j.immuni.2021.04.024 Pubmed: 34019797 ]
- Dpp9-card8 complex (Complex from Homo sapiens)
- Dipeptidyl peptidase 9 (98 kDa, Protein from Homo sapiens)
- Caspase recruitment domain-containing protein 8 (60 kDa, Protein from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7jn7
Q-score: 0.403
Sharif H, Hollingsworth LR, Griswold AR, Hsiao JC, Wang Q, Bachovchin DA, Wu H
Immunity (2021) 54 pp. 1392- [ DOI: doi:10.1016/j.immuni.2021.04.024 Pubmed: 34019797 ]
- Dpp9-card8 complex (Complex from Homo sapiens)
- [(2~{r})-1-[(2~{r})-2-azanyl-3-methyl-butanoyl]pyrrolidin-2-yl]boronic acid (214 Da, Ligand)
- Dipeptidyl peptidase 9 (101 kDa, Protein from Homo sapiens)
- Caspase recruitment domain-containing protein 8 (60 kDa, Protein from Homo sapiens)