Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6dbo
Q-score: 0.297
Ru H, Mi W, Zhang P, Alt FW, Schatz DG, Liao M, Wu H
Nat Struct Mol Biol (2018) 25 pp. 732-742 [ DOI: doi:10.1038/s41594-018-0098-5 Pubmed: 30061602 ]
- Rag in complex with 12-rss and 23-rss substrate dnas (Complex from Danio rerio)
- Recombination activating gene 1 - mbp chimera (131 kDa, Protein from Danio rerio)
- Reverse strand of substrate rss dna (9 kDa, DNA from Danio rerio)
- Zinc ion (65 Da, Ligand)
- Forward strand of substrate rss dna (9 kDa, DNA from Danio rerio)
- Recombination activating gene 2 (59 kDa, Protein from Danio rerio)
- Calcium ion (40 Da, Ligand)
Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs
Resolution: 4.22 Å
EM Method: Single-particle
Fitted PDBs: 6dbq
Q-score: 0.296
Ru H, Mi W, Zhang P, Alt FW, Schatz DG, Liao M, Wu H
Nat Struct Mol Biol (2018) 25 pp. 732-742 [ DOI: doi:10.1038/s41594-018-0098-5 Pubmed: 30061602 ]
- Rag in complex with 12-rss and 23-rss substrate dnas (Complex from Danio rerio)
- Molecule name: reverse strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)
- Reverse strand of 23-rss substrate dna (18 kDa, DNA from Danio rerio)
- Recombination activating gene 1 - mbp chimera (131 kDa, Protein from Danio rerio)
- Zinc ion (65 Da, Ligand)
- Recombination activating gene 2 (59 kDa, Protein from Danio rerio)
- Calcium ion (40 Da, Ligand)
- Molecule name: forward strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)
- Molecule name: forward strand of 23-rss substrate dna (18 kDa, DNA from Danio rerio)
Cryo-EM structure of RAG in complex with one melted RSS and one unmelted RSS
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6dbr
Q-score: 0.36
Ru H, Mi W, Zhang P, Alt FW, Schatz DG, Liao M, Wu H
Nat Struct Mol Biol (2018) 25 pp. 732-742 [ DOI: doi:10.1038/s41594-018-0098-5 Pubmed: 30061602 ]
- Reverse strand of unmelted rss substrate dna (10 kDa, DNA from Danio rerio)
- Forward strand of unmelted rss substrate dna (10 kDa, DNA from Danio rerio)
- Recombination activating gene 1 - mbp chimera (131 kDa, Protein from Danio rerio)
- Zinc ion (65 Da, Ligand)
- Recombination activating gene 2 (59 kDa, Protein from Danio rerio)
- Rag in complex with one melted rss and one unmelted rss (Complex from Danio rerio)
- Calcium ion (40 Da, Ligand)
- Reverse strand of melted rss substrate dna (10 kDa, DNA from Danio rerio)
- Forward strand of melted rss substrate dna (10 kDa, DNA from Danio rerio)
Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6dbt
Q-score: 0.323
Ru H, Mi W, Zhang P, Alt FW, Schatz DG, Liao M, Wu H
Nat Struct Mol Biol (2018) 25 pp. 732-742 [ DOI: doi:10.1038/s41594-018-0098-5 Pubmed: 30061602 ]
- Rag in complex with 12-rss and 23-rss substrate dnas (Complex from Danio rerio)
- Reverse strand of 23-rss substrate dna (18 kDa, DNA from Danio rerio)
- Recombination activating gene 1 - mbp chimera (131 kDa, Protein from Danio rerio)
- Reverse strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)
- Zinc ion (65 Da, Ligand)
- Recombination activating gene 2 (59 kDa, Protein from Danio rerio)
- Calcium ion (40 Da, Ligand)
- Forward strand of 23-rss substrate dna (18 kDa, DNA from Danio rerio)
- Forward strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)
Cryo-EM structure of RAG in complex with melted 12-RSS and unmelted 23-RSS substrates
Resolution: 4.29 Å
EM Method: Single-particle
Fitted PDBs: 6dbv
Q-score: 0.296
Ru H, Mi W, Zhang P, Alt FW, Schatz DG, Liao M, Wu H
Nat Struct Mol Biol (2018) 25 pp. 732-742 [ DOI: doi:10.1038/s41594-018-0098-5 Pubmed: 30061602 ]
- Rag in complex with 12-rss and 23-rss substrate dnas (Complex from Danio rerio)
- Reverse strand of 23-rss substrate dna (18 kDa, DNA from Danio rerio)
- Recombination activating gene 1 - mbp chimera (131 kDa, Protein from Danio rerio)
- Reverse strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)
- Zinc ion (65 Da, Ligand)
- Recombination activating gene 2 (59 kDa, Protein from Danio rerio)
- Calcium ion (40 Da, Ligand)
- Forward strand of 23-rss substrate dna (18 kDa, DNA from Danio rerio)
- Forward strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)
- Recombination activating gene 1 - mbp chimera (131 kDa, Protein from Danio rerio)
Cryo-EM structure of RAG in complex with 12-RSS substrate DNA
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 6dbw
Q-score: 0.265
Ru H, Mi W, Zhang P, Alt FW, Schatz DG, Liao M, Wu H
Nat Struct Mol Biol (2018) 25 pp. 732-742 [ DOI: doi:10.1038/s41594-018-0098-5 Pubmed: 30061602 ]
- Rag in complex with 12-rss substrate dna (Complex from Danio rerio)
- Recombination activating gene 1 - mbp chimera (131 kDa, Protein from Danio rerio)
- Reverse strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)
- Zinc ion (65 Da, Ligand)
- Recombination activating gene 2 (59 kDa, Protein from Danio rerio)
- Calcium ion (40 Da, Ligand)
- Forward strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)
Cryo-EM structure of RAG in complex with 12-RSS substrate DNA
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6dbx
Q-score: 0.307
Ru H, Mi W, Zhang P, Alt FW, Schatz DG, Liao M, Wu H
Nat Struct Mol Biol (2018) 25 pp. 732-742 [ DOI: doi:10.1038/s41594-018-0098-5 Pubmed: 30061602 ]
- Rag in complex with 12-rss substrate dna (Complex from Danio rerio)
- Recombination activating gene 1 - mbp chimera (131 kDa, Protein from Danio rerio)
- Reverse strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)
- Zinc ion (65 Da, Ligand)
- Recombination activating gene 2 (59 kDa, Protein from Danio rerio)
- Calcium ion (40 Da, Ligand)
- Forward strand of 12-rss substrate dna (15 kDa, DNA from Danio rerio)