Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens (UltrAuFoil)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8hsb
Q-score: 0.38
Yan Y, Xiao J, Huang F, Xian W, Yu B, Cheng R, Wu H, Lu X, Wang X, Huang W, Li J, Oyejobi GK, Robinson CV, Wu H, Wu D, Liu X, Wang L, Zhu B
Nat Microbiol (2024) 9 pp. 1566-1578 [ DOI: doi:10.1038/s41564-024-01684-z Pubmed: 38649411 ]
- Cdng-e2 binary complex (Complex from Serratia marcescens)
- Type vi secretion protein (18 kDa, Protein from Serratia marcescens)
- Cdng (45 kDa, Protein from Serratia marcescens)
Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8yjy
Q-score: 0.426
Yan Y, Xiao J, Huang F, Xian W, Yu B, Cheng R, Wu H, Lu X, Wang X, Huang W, Li J, Oyejobi GK, Robinson CV, Wu H, Wu D, Liu X, Wang L, Zhu B
Nat Microbiol (2024) 9 pp. 1566-1578 [ DOI: doi:10.1038/s41564-024-01684-z Pubmed: 38649411 ]
- Type vi secretion protein (18 kDa, Protein from Serratia marcescens)
- Cdng-e2 binary complex (Complex from Serratia marcescens)
- Smcdng (45 kDa, Protein from Serratia marcescens)
Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8cth
Q-score: 0.375
Li J, Wang L, Hahn Q, Nowak RP, Viennet T, Orellana EA, Roy Burman SS, Yue H, Hunkeler M, Fontana P, Wu H, Arthanari H, Fischer ES, Gregory RI
Nature (2023) 613 pp. 391-397 [ Pubmed: 36599985 DOI: doi:10.1038/s41586-022-05566-4 ]
- Mettl1-wdr4-trna_phe complex (Complex)
- Trna (guanine-n(7)-)-methyltransferase non-catalytic subunit wdr4 (47 kDa, Protein from Homo sapiens)
- Trna (guanine-n(7)-)-methyltransferase (31 kDa, Protein from Homo sapiens)
- Mettl1-wdr4 (Complex from Homo sapiens)
- Trna_phenylalanine specific (Cellular component from Saccharomyces cerevisiae)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Phe-trna (24 kDa, RNA from Saccharomyces cerevisiae)
Cryo-EM structure of human METTL1-WDR4-tRNA(Val) complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8cti
Q-score: 0.294
Li J, Wang L, Hahn Q, Nowak RP, Viennet T, Orellana EA, Roy Burman SS, Yue H, Hunkeler M, Fontana P, Wu H, Arthanari H, Fischer ES, Gregory RI
Nature (2023) 613 pp. 391-397 [ Pubmed: 36599985 DOI: doi:10.1038/s41586-022-05566-4 ]
- Trna-val-tac-2-1 (23 kDa, RNA from Homo sapiens)
- Trna (guanine-n(7)-)-methyltransferase non-catalytic subunit wdr4 (47 kDa, Protein from Homo sapiens)
- Trna (guanine-n(7)-)-methyltransferase (31 kDa, Protein from Homo sapiens)
- Trna (guanine-n(7)-)-methyltransferase, trna (guanine-n(7)-)-methyltransferase non-catalytic subunit wdr4 (Complex from Homo sapiens)
- Mettl1-wdr4-trna_val (Complex)
- Rna (Complex)
Structure of lysosomal membrane protein
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7lf6
Q-score: 0.307
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6vfe
Q-score: 0.358
Xia S, Zhang Z, Magupalli VG, Pablo JL, Dong Y, Vora SM, Wang L, Fu TM, Jacobson MP, Greka A, Lieberman J, Ruan J, Wu H
Nature (2021) 593 pp. 607-611 [ Pubmed: 33883744 DOI: doi:10.1038/s41586-021-03478-3 ]
- Gasdermin-d, n-terminal (26 kDa, Protein from Homo sapiens)
- Pore-forming protein gasdermin-d (1 MDa, Complex from Homo sapiens)
The Vo region of human V-ATPase in state 1 (focused refinement)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6wlw
Q-score: 0.579
Wang L, Wu D, Robinson CV, Wu H, Fu TM
Mol Cell (2020) 80 pp. 501- [ Pubmed: 33065002 DOI: doi:10.1016/j.molcel.2020.09.029 ]
- V-type proton atpase subunit d 1 (40 kDa, Protein from Homo sapiens)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Homo sapiens)
- (2~{s})-2-$l^{4}-azanyl-3-[[(2~{r})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid (497 Da, Ligand)
- Renin receptor (39 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit s1 (52 kDa, Protein from Homo sapiens)
- Ribonuclease kappa (15 kDa, Protein from Homo sapiens)
- Methyl (3r,6z,10e,14e)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate (534 Da, Ligand)
- Human v-atpase with sidk (Complex from Homo sapiens)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (9 kDa, Protein from Homo sapiens)
- Phosphatidylethanolamine (734 Da, Ligand)
- 1,2-dicaproyl-sn-phosphatidyl-l-serine (455 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Homo sapiens)
- Tri(methyl)-[2-[[(2~{r})-2-[(~{z})-octadec-9-enoyl]oxy-3-[(~{e})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium (787 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
The V1 region of human V-ATPase in state 1 (focused refinement)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6wlz
Q-score: 0.573
Wang L, Wu D, Robinson CV, Wu H, Fu TM
Mol Cell (2020) 80 pp. 501- [ Pubmed: 33065002 DOI: doi:10.1016/j.molcel.2020.09.029 ]
- Sidk (65 kDa, Protein from Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
- V-type proton atpase subunit e 1 (26 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Homo sapiens)
- Human v-atpase (Complex from Homo sapiens)
- Human v-atpase and sidk complex (Complex)
- V-type proton atpase subunit f (13 kDa, Protein from Homo sapiens)
- Sidk (Complex from Legionella pneumophila subsp. pneumophila)
- V-type proton atpase subunit g 1 (13 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit d (28 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Homo sapiens)
Human V-ATPase in state 1 with SidK and ADP
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6wm2
Q-score: 0.535
Wang L, Wu D, Robinson CV, Wu H, Fu TM
Mol Cell (2020) 80 pp. 501- [ Pubmed: 33065002 DOI: doi:10.1016/j.molcel.2020.09.029 ]
- V-type proton atpase subunit d 1 (40 kDa, Protein from Homo sapiens)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Homo sapiens)
- 1,2-dicaproyl-sn-phosphatidyl-l-serine (455 Da, Ligand)
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit g 1 (13 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit f (13 kDa, Protein from Homo sapiens)
- Human v-atpase in state 1 with sidk and adp (Complex from Homo sapiens)
- (2~{s})-2-$l^{4}-azanyl-3-[[(2~{r})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid (497 Da, Ligand)
- V-type proton atpase subunit s1 (52 kDa, Protein from Homo sapiens)
- Phosphatidylethanolamine (734 Da, Ligand)
- Sidk (65 kDa, Protein from Legionella pneumophila)
- V-type proton atpase subunit d (28 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Homo sapiens)
- Tri(methyl)-[2-[[(2~{r})-2-[(~{z})-octadec-9-enoyl]oxy-3-[(~{e})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium (787 Da, Ligand)
- Renin receptor (39 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit h (55 kDa, Protein from Homo sapiens)
- Ribonuclease kappa (15 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (9 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Methyl (3r,6z,10e,14e)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate (534 Da, Ligand)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit c 1 (43 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Human V-ATPase in state 2 with SidK and ADP
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6wm3
Q-score: 0.477
Wang L, Wu D, Robinson CV, Wu H, Fu TM
Mol Cell (2020) 80 pp. 501- [ Pubmed: 33065002 DOI: doi:10.1016/j.molcel.2020.09.029 ]
- V-type proton atpase subunit d 1 (40 kDa, Protein from Homo sapiens)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Homo sapiens)
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit g 1 (13 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit f (13 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit s1 (52 kDa, Protein from Homo sapiens)
- Human v-atpase with sidk and adp (Complex from Homo sapiens)
- V-type proton atpase subunit d (28 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Homo sapiens)
- Sidk (65 kDa, Protein from Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
- Renin receptor (39 kDa, Protein from Homo sapiens)
- Ribonuclease kappa (15 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit h (55 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (9 kDa, Protein from Homo sapiens)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit c 1 (43 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)