cryo-EM structure of Omicron BA.5 S protein in complex with XGv282
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8gto
Q-score: 0.342
Chi X, Xia L, Zhang G, Chi X, Huang B, Zhang Y, Chen Z, Han J, Wu L, Li Z, Sun H, Huang P, Yu C, Chen W, Zhou Q
Cell Discov (2023) 9 pp. 37-37 [ Pubmed: 37015915 DOI: doi:10.1038/s41421-023-00535-1 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S protein of omicron ba.5 variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of omicron ba.5 s protein in complex with xgv282 (Complex)
- Heavy chain of xgv282 (12 kDa, Protein from Homo sapiens)
- Xgv282 (Complex from Homo sapiens)
- Light chain of xgv282 (11 kDa, Protein from Homo sapiens)
cryo-EM structure of Omicron BA.5 S protein in complex with XGv289
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gtp
Q-score: 0.335
Chi X, Xia L, Zhang G, Chi X, Huang B, Zhang Y, Chen Z, Han J, Wu L, Li Z, Sun H, Huang P, Yu C, Chen W, Zhou Q
Cell Discov (2023) 9 pp. 37-37 [ Pubmed: 37015915 DOI: doi:10.1038/s41421-023-00535-1 ]
- Xgv289 (Complex from Homo sapiens)
- S protein of omicron ba.5 variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of xgv289 (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of omicron ba.5 s protein in complex with xgv289 (Complex)
- Heavy chain of xgv289 (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
cryo-EM structure of Omicron BA.5 S protein in complex with S2L20
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gtq
Q-score: 0.362
Chi X, Xia L, Zhang G, Chi X, Huang B, Zhang Y, Chen Z, Han J, Wu L, Li Z, Sun H, Huang P, Yu C, Chen W, Zhou Q
Cell Discov (2023) 9 pp. 37-37 [ Pubmed: 37015915 DOI: doi:10.1038/s41421-023-00535-1 ]
- Cryo-em structure of omicron ba.5 s protein in complex with s2l20 (Complex)
- S2l20 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S protein of omicron ba.5 variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s2l20 (13 kDa, Protein from Homo sapiens)
- Light chain of s2l20 (11 kDa, Protein from Homo sapiens)
Cryo EM structure of a Na+-bound Na+,K+-ATPase in the E1 state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7e1z
Q-score: 0.479
Guo Y, Zhang Y, Yan R, Huang B, Ye F, Wu L, Chi X, Shi Y, Zhou Q
Nat Commun (2022) 13 pp. 3957-3957 [ DOI: doi:10.1038/s41467-022-31602-y Pubmed: 35803952 ]
- Cryo em structure of a na+-bound na+,k+-atpase in the e1 state (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Sodium/potassium-transporting atpase subunit gamma (7 kDa, Protein from Homo sapiens)
- Sodium ion (22 Da, Ligand)
- Sodium/potassium-transporting atpase subunit alpha-1 (113 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo EM structure of a K+-bound Na+,K+-ATPase in the E2 state
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7e20
Q-score: 0.563
Guo Y, Zhang Y, Yan R, Huang B, Ye F, Wu L, Chi X, Shi Y, Zhou Q
Nat Commun (2022) 13 pp. 3957-3957 [ DOI: doi:10.1038/s41467-022-31602-y Pubmed: 35803952 ]
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Sodium/potassium-transporting atpase subunit gamma (7 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Cryo em structure of a k+-bound na+,k+-atpase in the e2 state (Complex from Homo sapiens)
- Sodium/potassium-transporting atpase subunit alpha-1 (113 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo EM structure of a Na+-bound Na+,K+-ATPase in the E1 state with ATP-gamma-S
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7e21
Q-score: 0.535
Guo Y, Zhang Y, Yan R, Huang B, Ye F, Wu L, Chi X, Shi Y, Zhou Q
Nat Commun (2022) 13 pp. 3957-3957 [ DOI: doi:10.1038/s41467-022-31602-y Pubmed: 35803952 ]
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Cryo em structure of a na+-bound na+,k+-atpase in the e1 state with atp-gamma-s (Complex from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Sodium/potassium-transporting atpase subunit gamma (7 kDa, Protein from Homo sapiens)
- Sodium ion (22 Da, Ligand)
- Sodium/potassium-transporting atpase subunit alpha-1 (113 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)