Cryo-EM structure of partial VP4 from simian rotavirus SA11
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 8ygr
Q-score: 0.413
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Partial vp4 of rotavirus (Complex from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Rotavirus a (Virus from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8ygs
Q-score: 0.444
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Rotavirus vp4 (Complex from Rotavirus A)
- Immune complex of rotavirus with 7h13 (Complex from Rotavirus A)
- Fab 7h13 (Complex from Mus musculus)
- Antibody 7h13 heavy chain (12 kDa, Protein from Mus musculus)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Antibody 7h13 light chain (11 kDa, Protein from Mus musculus)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13 at Low concentration
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (left side)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8ygt
Q-score: 0.559
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Rotavirus vp4 (Complex from Rotavirus A)
- Immune complex of rotavirus with 7h13 (Complex from Rotavirus A)
- Fab 7h13 (Complex from Mus musculus)
- Antibody 7h13-i54g mutant heavy chain (12 kDa, Protein from Mus musculus)
- Antibody 7h13-i54g mutant light chain (11 kDa, Protein from Mus musculus)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (right side)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8ygu
Q-score: 0.526
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Rotavirus vp4 (Complex from Rotavirus A)
- Outer capsid protein vp4 (87 kDa, Protein from Rotavirus A)
- Immune complex of rotavirus with 7h13-i54g mutant (Complex from Rotavirus A)
- Fab 7h13 (Complex from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Antibody 7h13-i54g mutant light chain (11 kDa, Protein from Mus musculus)
- Antibody 7h13-i54g mutant heavy chain (12 kDa, Protein from Mus musculus)
The structure of CVA10 virus mature virion
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acu
Q-score: 0.086
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Zhou ZH, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp4 (7 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Sphingosine (299 Da, Ligand)
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
The structure of CVA10 virus procapsid particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6acw
Q-score: 0.476
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp0 (35 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
The structure of CVA10 virus A-particle
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acy
Q-score: 0.543
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
The structure of CVA10 virus A-particle from its complex with Fab 2G8
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6acz
Q-score: 0.466
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
The structure of CVA10 mature virion in complex with Fab 2G8
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ad0
Q-score: 0.498
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp4 (7 kDa, Protein from Coxsackievirus A10)
- Vl of fab 2g8 (12 kDa, Protein from Mus musculus)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Vh of fab 2g8 (13 kDa, Protein from Mus musculus)
- Sphingosine (299 Da, Ligand)
- Vp2 (27 kDa, Protein from Coxsackievirus A10)