Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7yhk
Q-score: 0.556
Li T, Chen J, Zheng Q, Xue W, Zhang L, Rong R, Zhang S, Wang Q, Hong M, Zhang Y, Cui L, He M, Lu Z, Zhang Z, Chi X, Li J, Huang Y, Wang H, Tang J, Ying D, Zhou L, Wang Y, Yu H, Zhang J, Gu Y, Chen Y, Li S, Xia N
Nat Commun (2022) 13 pp. 5182-5182 [ Pubmed: 36056024 DOI: doi:10.1038/s41467-022-32926-5 ]
- Neutralizing antibody 12h5 (Complex from Mus musculus)
- Hemagglutinin (62 kDa, Protein from Influenza A virus (A/Beijing/262/1995(H1N1)))
- Ha trimer of a/beijing/262/1995(h1n1) (Complex from Influenza A virus (A/Beijing/262/1995(H1N1)))
- 12h5 heavy chain (12 kDa, Protein from Mus musculus)
- 12h5 light chain (12 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cryo-em structure of the ha trimer of a/beijing/262/1995(h1n1) in complex with neutralizing antibody 12h5 (Complex)
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7wp0
Q-score: 0.48
Ju B, Zheng Q, Guo H, Fan Q, Li T, Song S, Sun H, Shen S, Zhou X, Xue W, Cui L, Zhou B, Li S, Xia N, Zhang Z
Cell Res (2022) 32 pp. 491-494 [ DOI: doi:10.1038/s41422-022-00638-6 Pubmed: 35260792 ]
- Vacw-209 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 delta s6p trimer in complex with neutralizing antibody vacw-209 (Complex from Homo sapiens)
- Sars-cov-2 delta (Complex)
- Vacw-209 heavy chain (14 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ig c335_light_iglv1-40_iglj3 (11 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike protein in complex with three human neutralizing antibodies
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 7whz
Q-score: 0.487
Wang S, Sun H, Zhang Y, Yuan L, Wang Y, Zhang T, Wang S, Zhang J, Yu H, Xiong H, Tang Z, Liu L, Huang Y, Chen X, Li T, Ying D, Liu C, Chen Z, Yuan Q, Zhang J, Cheng T, Li S, Guan Y, Zheng Q, Zheng Z, Xia N
Cell Rep (2022) 39 pp. 110862-110862 [ DOI: doi:10.1016/j.celrep.2022.110862 Pubmed: 35594869 ]
- Xma04 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Xma01 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Xma09 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Ig c934_light_igkv1-5_igkj1 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with three human neutralizing antibodies (Complex from Severe acute respiratory syndrome coronavirus 2)
- Igl c4029_light_igkv1-39_igkj2 (11 kDa, Protein from Homo sapiens)
- Ig c1437_light_iglv1-40_iglj1 (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron variant spike in complex with three human neutralizing antibodies
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 7wi0
Q-score: 0.457
Wang S, Sun H, Zhang Y, Yuan L, Wang Y, Zhang T, Wang S, Zhang J, Yu H, Xiong H, Tang Z, Liu L, Huang Y, Chen X, Li T, Ying D, Liu C, Chen Z, Yuan Q, Zhang J, Cheng T, Li S, Guan Y, Zheng Q, Zheng Z, Xia N
Cell Rep (2022) 39 pp. 110862-110862 [ DOI: doi:10.1016/j.celrep.2022.110862 Pubmed: 35594869 ]
- Xma04 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Xma01 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron variant spike in complex with three human neutralizing antibodies (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xma09 heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- Ig c934_light_igkv1-5_igkj1 (11 kDa, Protein from Homo sapiens)
- Igl c4029_light_igkv1-39_igkj2 (11 kDa, Protein from Homo sapiens)
- Ig c1437_light_iglv1-40_iglj1 (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (22 kDa, Protein from Homo sapiens)
Cryo-EM structure of Coxsackievirus B1 mature virion
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7dpf
Q-score: 0.601
Xu L, Zheng Q, Zhu R, Yin Z, Yu H, Lin Y, Wu Y, He M, Huang Y, Jiang Y, Sun H, Zha Z, Yang H, Huang Q, Zhang D, Chen Z, Ye X, Han J, Yang L, Liu C, Que Y, Fang M, Gu Y, Zhang J, Luo W, Zhou ZH, Li S, Cheng T, Xia N
Cell Host Microbe (2021) 29 pp. 448-462.e5 [ DOI: doi:10.1016/j.chom.2021.01.001 Pubmed: 33539764 ]
- Virion protein 1 (31 kDa, Protein from Coxsackievirus B1)
- Palmitic acid (256 Da, Ligand)
- Coxsackievirus b1 (Virus from Coxsackievirus B1)
- Vp2 (29 kDa, Protein from Coxsackievirus B1)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus B1)
- Vp3 (26 kDa, Protein from Coxsackievirus B1)
Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 5F5
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7dq7
Q-score: 0.565
Xu L, Zheng Q, Zhu R, Yin Z, Yu H, Lin Y, Wu Y, He M, Huang Y, Jiang Y, Sun H, Zha Z, Yang H, Huang Q, Zhang D, Chen Z, Ye X, Han J, Yang L, Liu C, Que Y, Fang M, Gu Y, Zhang J, Luo W, Zhou ZH, Li S, Cheng T, Xia N
Cell Host Microbe (2021) 29 pp. 448-462.e5 [ DOI: doi:10.1016/j.chom.2021.01.001 Pubmed: 33539764 ]
- Virion protein 1 (31 kDa, Protein from Coxsackievirus B1)
- 5f5 vl (11 kDa, Protein from Mus musculus)
- Palmitic acid (256 Da, Ligand)
- Vp2 (29 kDa, Protein from Coxsackievirus B1)
- Nab 5f5 (Complex from Mus musculus)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus B1)
- Vp3 (26 kDa, Protein from Coxsackievirus B1)
- Coxsackievirus b1 complex with nab 5f5 (Complex)
- 5f5 vh (13 kDa, Protein from Mus musculus)
- Coxsackievirus b1 (Complex from Coxsackievirus B1)