SARS-CoV-2 Spike trimer in complex with RmAb 9H1 Fab in the class 1 conformation
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8heb
Q-score: 0.379
Chu X, Ding X, Yang Y, Lu Y, Li T, Gao Y, Zheng L, Xiao H, Yang T, Cheng H, Huang H, Liu Y, Lou Y, Wu C, Chen Y, Yang H, Ji X, Guo H
Biochem Biophys Res Commun (2023) 660 pp. 43-49 [ DOI: doi:10.1016/j.bbrc.2023.04.002 Pubmed: 37062240 ]
- Rabbit antibody 9h1 light chain (11 kDa, Protein from Oryctolagus cuniculus)
- Spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Rabbit antibody 9h1 heavy chain (12 kDa, Protein from Oryctolagus cuniculus)
- Sars-cov-2 wt spike glycoprotein complex with rmab 9h1 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 9h1 fab (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Spike trimer in complex with RmAb 9H1 Fab in the class 2 conformation
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8hec
Q-score: 0.358
Chu X, Ding X, Yang Y, Lu Y, Li T, Gao Y, Zheng L, Xiao H, Yang T, Cheng H, Huang H, Liu Y, Lou Y, Wu C, Chen Y, Yang H, Ji X, Guo H
Biochem Biophys Res Commun (2023) 660 pp. 43-49 [ DOI: doi:10.1016/j.bbrc.2023.04.002 Pubmed: 37062240 ]
- Rabbit antibody 9h1 light chain (11 kDa, Protein from Oryctolagus cuniculus)
- Spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Rabbit antibody 9h1 heavy chain (12 kDa, Protein from Oryctolagus cuniculus)
- Sars-cov-2 wt spike glycoprotein complex with rmab 9h1 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 9h1 fab (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Local refinement of the SARS-CoV-2 Spike trimer in complex with RmAb 9H1 Fab
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 8hed
Q-score: 0.469
Chu X, Ding X, Yang Y, Lu Y, Li T, Gao Y, Zheng L, Xiao H, Yang T, Cheng H, Huang H, Liu Y, Lou Y, Wu C, Chen Y, Yang H, Ji X, Guo H
Biochem Biophys Res Commun (2023) 660 pp. 43-49 [ DOI: doi:10.1016/j.bbrc.2023.04.002 Pubmed: 37062240 ]
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Rabbit antibody 9h1 light chain (11 kDa, Protein from Oryctolagus cuniculus)
- Sars-cov-2 wt spike glycoprotein rbd complex with 9h1 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Rabbit antibody 9h1 heavy chain (12 kDa, Protein from Oryctolagus cuniculus)
- Sars-cov-2 spike glycoprotein rbd (Complex from Oryctolagus cuniculus)
- 9h1 fab (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7ws0
Q-score: 0.46
Guo H, Gao Y, Li T, Li T, Lu Y, Zheng L, Liu Y, Yang T, Luo F, Song S, Wang W, Yang X, Nguyen HC, Zhang H, Huang A, Jin A, Yang H, Rao Z, Ji X
Cell Rep (2022) 39 pp. 110770-110770 [ DOI: doi:10.1016/j.celrep.2022.110770 Pubmed: 35477022 ]
- Sars-cov-2 spike glycoprotein complex with 510a5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 510a5 light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (Complex from Homo sapiens)
- Fab (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 510a5 heavy chain (13 kDa, Protein from Homo sapiens)
Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ws1
Q-score: 0.421
Guo H, Gao Y, Li T, Li T, Lu Y, Zheng L, Liu Y, Yang T, Luo F, Song S, Wang W, Yang X, Nguyen HC, Zhang H, Huang A, Jin A, Yang H, Rao Z, Ji X
Cell Rep (2022) 39 pp. 110770-110770 [ DOI: doi:10.1016/j.celrep.2022.110770 Pubmed: 35477022 ]
- Sars-cov-2 spike glycoprotein complex with 510a5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 510a5 light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (Complex from Homo sapiens)
- Fab (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 510a5 heavy chain (13 kDa, Protein from Homo sapiens)
Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ws2
Q-score: 0.492
Guo H, Gao Y, Li T, Li T, Lu Y, Zheng L, Liu Y, Yang T, Luo F, Song S, Wang W, Yang X, Nguyen HC, Zhang H, Huang A, Jin A, Yang H, Rao Z, Ji X
Cell Rep (2022) 39 pp. 110770-110770 [ DOI: doi:10.1016/j.celrep.2022.110770 Pubmed: 35477022 ]
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein complex with 510a5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 510a5 light chain (11 kDa, Protein from Homo sapiens)
- 510a5 heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (Complex from Homo sapiens)
- Fab (Complex)
Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ws3
Q-score: 0.411
Guo H, Gao Y, Li T, Li T, Lu Y, Zheng L, Liu Y, Yang T, Luo F, Song S, Wang W, Yang X, Nguyen HC, Zhang H, Huang A, Jin A, Yang H, Rao Z, Ji X
Cell Rep (2022) 39 pp. 110770-110770 [ DOI: doi:10.1016/j.celrep.2022.110770 Pubmed: 35477022 ]
- 510a5 light chain (11 kDa, Protein from Homo sapiens)
- 510a5 heavy chain (13 kDa, Protein from Homo sapiens)
- Delta spike glycoprotein (Complex from Homo sapiens)
- Fab (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 delta variant spike glycoprotein complex with 510a5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7ws4
Q-score: 0.419
Guo H, Gao Y, Li T, Li T, Lu Y, Zheng L, Liu Y, Yang T, Luo F, Song S, Wang W, Yang X, Nguyen HC, Zhang H, Huang A, Jin A, Yang H, Rao Z, Ji X
Cell Rep (2022) 39 pp. 110770-110770 [ DOI: doi:10.1016/j.celrep.2022.110770 Pubmed: 35477022 ]
- 510a5 light chain (11 kDa, Protein from Homo sapiens)
- Omicron spike glycoprotein (Complex from Homo sapiens)
- 510a5 heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab (Complex)
- Sars-cov-2 omicron spike glycoprotein complex with 510a5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7ws5
Q-score: 0.378
Guo H, Gao Y, Li T, Li T, Lu Y, Zheng L, Liu Y, Yang T, Luo F, Song S, Wang W, Yang X, Nguyen HC, Zhang H, Huang A, Jin A, Yang H, Rao Z, Ji X
Cell Rep (2022) 39 pp. 110770-110770 [ DOI: doi:10.1016/j.celrep.2022.110770 Pubmed: 35477022 ]
- 510a5 light chain (11 kDa, Protein from Homo sapiens)
- Omicron spike glycoprotein (Complex from Homo sapiens)
- 510a5 heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab (Complex)
- Sars-cov-2 omicron spike glycoprotein complex with 510a5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7ws6
Q-score: 0.403
Guo H, Gao Y, Li T, Li T, Lu Y, Zheng L, Liu Y, Yang T, Luo F, Song S, Wang W, Yang X, Nguyen HC, Zhang H, Huang A, Jin A, Yang H, Rao Z, Ji X
Cell Rep (2022) 39 pp. 110770-110770 [ DOI: doi:10.1016/j.celrep.2022.110770 Pubmed: 35477022 ]
- 510a5 light chain (11 kDa, Protein from Homo sapiens)
- 510a5 fab (Complex)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike rbd (Complex from Homo sapiens)
- Sars-cov-2 omicron spike rbd complex with 510a5 fab local refine (Complex from Severe acute respiratory syndrome coronavirus 2)
- 510a5 heavy chain (13 kDa, Protein from Homo sapiens)