Resolution: 9.2 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8qv2
Q-score: 0.112
Dendooven T, Yatskevich S, Burt A, Chen ZA, Bellini D, Rappsilber J, Kilmartin JV, Barford D
Nat Struct Mol Biol (2024) 31 pp. 1134-1144 [ Pubmed: 38609662 DOI: doi:10.1038/s41594-024-01281-y ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Water (18 Da, Ligand)
- Tubulin alpha-1 chain (49 kDa, Protein from Saccharomyces cerevisiae)
- Spindle pole body component (98 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Spindle pole body component 110 (111 kDa, Protein from Saccharomyces cerevisiae)
- Tubulin gamma chain (52 kDa, Protein from Saccharomyces cerevisiae)
- Unkown protein (5 kDa, Protein from Saccharomyces cerevisiae)
- Spindle pole body component (96 kDa, Protein from Saccharomyces cerevisiae)
- Y-tubulin ring complex capping the microtubule minus end (Cellular component from Saccharomyces cerevisiae)
- Tubulin beta chain (50 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 8.2 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8qv3
Q-score: 0.144
Dendooven T, Yatskevich S, Burt A, Chen ZA, Bellini D, Rappsilber J, Kilmartin JV, Barford D
Nat Struct Mol Biol (2024) 31 pp. 1134-1144 [ Pubmed: 38609662 DOI: doi:10.1038/s41594-024-01281-y ]
- Water (18 Da, Ligand)
- Y-tubulin small complex bound to two alpha/beta tubulin dimers (Cellular component from Saccharomyces cerevisiae)
- Unknown protein (5 kDa, Protein from Saccharomyces cerevisiae)
- Tubulin alpha-1 chain (49 kDa, Protein from Saccharomyces cerevisiae)
- Spindle pole body component (98 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Spindle pole body component 110 (111 kDa, Protein from Saccharomyces cerevisiae)
- Tubulin gamma chain (52 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein (5 kDa, Protein from Saccharomyces cerevisiae)
- Spindle pole body component (96 kDa, Protein from Saccharomyces cerevisiae)
- Tubulin beta chain (50 kDa, Protein from Saccharomyces cerevisiae)
Structure of the human outer kinetochore KMN network complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8ppr
Q-score: 0.341
Yatskevich S, Yang J, Bellini D, Zhang Z, Barford D
Nat Struct Mol Biol (2024) 31 pp. 874-883 [ Pubmed: 38459127 DOI: doi:10.1038/s41594-024-01249-y ]
- Kinetochore scaffold 1 (265 kDa, Protein from Homo sapiens)
- Outer kinetochore kmn network junction complex (Complex from Homo sapiens)
- Kinetochore-associated protein dsn1 homolog (40 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Zw10 interactor (31 kDa, Protein from Homo sapiens)
- Kinetochore protein spc24 (22 kDa, Protein from Homo sapiens)
- Protein mis12 homolog (24 kDa, Protein from Homo sapiens)
- Polyamine-modulated factor 1 (23 kDa, Protein from Homo sapiens)
- Kinetochore-associated protein nsl1 homolog (32 kDa, Protein from Homo sapiens)
- Kinetochore protein spc25 (26 kDa, Protein from Homo sapiens)
Structure of the human CCAN deltaCT complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pkn
Q-score: 0.319
Yatskevich S, Muir KW, Bellini D, Zhang Z, Yang J, Tischer T, Predin M, Dendooven T, McLaughlin SH, Barford D
Science (2022) 376 pp. 844-852 [ DOI: doi:10.1126/science.abn3810 Pubmed: 35420891 ]
- Centromere protein h (28 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Centromere protein n (39 kDa, Protein from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Human inner kinetochore ccan (Complex from Homo sapiens)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Centromere protein q (30 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Centromere protein l (39 kDa, Protein from Homo sapiens)
Structure of the human CCAN bound to alpha satellite DNA
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 7r5s
Q-score: 0.465
Yatskevich S, Muir KW, Bellini D, Zhang Z, Yang J, Tischer T, Predin M, Dendooven T, McLaughlin SH, Barford D
Science (2022) 376 pp. 844-852 [ DOI: doi:10.1126/science.abn3810 Pubmed: 35420891 ]
- Centromere protein n (39 kDa, Protein from Homo sapiens)
- Centromere protein q (30 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Human ccan complex with bound alpha-satellite dna (Complex)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Centromere protein w (10 kDa, Protein from Homo sapiens)
- Centromere protein h (28 kDa, Protein from Homo sapiens)
- Dna (66-mer) (16 kDa, DNA from Homo sapiens)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
- Centromere protein s (15 kDa, Protein from Homo sapiens)
- Centromere protein t (60 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Centromere protein x (8 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Dna (66-mer) (16 kDa, DNA from Homo sapiens)
SUMOylated apoAPC/C with repositioned APC2 WHB domain
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 6tnt
Q-score: 0.39
Yatskevich S, Kroonen JS, Alfieri C, Tischer T, Howes AC, Clijsters L, Yang J, Zhang Z, Yan K, Vertegaal ACO, Barford D
Cell Rep (2021) 34 pp. 108929-108929 [ Pubmed: 33789095 DOI: doi:10.1016/j.celrep.2021.108929 ]
- Anaphase-promoting complex subunit 5 (85 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 11 (9 kDa, Protein from Homo sapiens)
- Unidentified peptide (Complex from unidentified)
- Anaphase-promoting complex subunit 15 (14 kDa, Protein from Homo sapiens)
- Body 2 with repositioned apc2 whb domain after multi body refinement (Complex from Homo sapiens)
- Anaphase-promoting complex subunit cdc26 (9 kDa, Protein from Homo sapiens)
- Sumoylated apoapc/c with repositioned apc2 whb domain (Complex)
- Anaphase-promoting complex subunit 4 (92 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 1 (216 kDa, Protein from Homo sapiens)
- Unidentified peptide (1 kDa, Protein from unidentified)
- Zinc ion (65 Da, Ligand)
- Anaphase-promoting complex subunit 13 (8 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 7 (66 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 2 (93 kDa, Protein from Homo sapiens)
- Cell division cycle protein 27 homolog (91 kDa, Protein from Homo sapiens)
- Cell division cycle protein 16 homolog (71 kDa, Protein from Homo sapiens)
- Cell division cycle protein 23 homolog (68 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 10 (21 kDa, Protein from Homo sapiens)
- Anaphase-promoting complex subunit 16 (11 kDa, Protein from Homo sapiens)
Cryo-EM structure of S.cerevisiae cohesin-Scc2-DNA complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6zz6
Q-score: 0.439
Collier JE, Lee BG, Roig MB, Yatskevich S, Petela NJ, Metson J, Voulgaris M, Gonzalez Llamazares A, Lowe J, Nasmyth KA
eLife (2020) 9 [ Pubmed: 32930661 DOI: doi:10.7554/eLife.59560 ]
- Structural maintenance of chromosomes protein 1,structural maintenance of chromosomes protein 1,structural maintenance of chromosomes protein 1 (40 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (34-mer) (10 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Complex of cohesin and scc2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Double strand dna (Complex from synthetic construct)
- Sister chromatid cohesion protein 2 (171 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (34-mer) (10 kDa, DNA from synthetic construct)
- Structural maintenance of chromosomes protein 3,structural maintenance of chromosomes protein 3,structural maintenance of chromosomes protein 3 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Sister chromatid cohesion protein 1,sister chromatid cohesion protein 1,sister chromatid cohesion protein 1 (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Complex of cohesin, scc2, atp and dna (485 kDa, Complex)