Human calpain-3 forms a homohexamer
Ye Q, Henrickson A, Demeler B, Balasco Serrao VH, Davies PL
J Biol Chem (2024) 301 pp. 108133-108133 [ Pubmed: 39725035 DOI: doi:10.1016/j.jbc.2024.108133 ]
- Human calpain-3 (Protein from Homo sapiens)
- Calpain-3 hexamer particle (514 kDa, Complex from Homo sapiens)
Structure of Enterobacter cloacae Cap2-CdnD02 2:2 complex
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 7to3
Q-score: 0.528
Ledvina HE, Ye Q, Gu Y, Sullivan AE, Quan Y, Lau RK, Zhou H, Corbett KD, Whiteley AT
Nature (2023) 616 pp. 319-325 [ Pubmed: 36755092 DOI: doi:10.1038/s41586-022-05647-4 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine monophosphate (347 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cyclic amp-amp-gmp synthase (45 kDa, Protein from Enterobacter cloacae)
- Cap2 (67 kDa, Protein from Enterobacter cloacae)
- Quaternary complex of cap2 and cdnd02 in a 2:2 stoichiometry, with cdnd02 substrate captured at the active site of cap2. (224 kDa, Complex from Enterobacter cloacae)
Structure of Enterobacter cloacae Cap2-CdnD02 2:1 complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7tqd
Q-score: 0.517
Ledvina HE, Ye Q, Gu Y, Sullivan AE, Quan Y, Lau RK, Zhou H, Corbett KD, Whiteley AT
Nature (2023) 616 pp. 319-325 [ Pubmed: 36755092 DOI: doi:10.1038/s41586-022-05647-4 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine monophosphate (347 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cyclic amp-amp-gmp synthase (45 kDa, Protein from Enterobacter cloacae)
- Ternary complex of cap2 and cdnd02 in a 2:1 stoichiometry. (179 kDa, Complex from Enterobacter cloacae)
- Cap2 (67 kDa, Protein from Enterobacter cloacae)
Complex of AMPPNP-Kif7 and Gli2 Zinc-Finger domain bound to microtubules
Resolution: 3.89 Å
EM Method: Helical reconstruction
Fitted PDBs: 7rx0
Q-score: 0.338
Haque F, Freniere C, Ye Q, Mani N, Wilson-Kubalek EM, Ku PI, Milligan RA, Subramanian R
Nat Cell Biol (2022) 24 pp. 1088-1098 [ Pubmed: 35725768 DOI: doi:10.1038/s41556-022-00935-7 ]
- Zinc finger protein gli2 (7 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Microtubules (Complex from Sus scrofa)
- Tubulin alpha-1a chain (50 kDa, Protein from Sus scrofa)
- Microtubule-bound complex of kif7 and gli2 zinc finger domain (Complex)
- Kinesin-like protein kif7 (59 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Kinesin kif7 (Complex from Homo sapiens)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Zinc-finger protein gli2 (Complex from Homo sapiens)
SARS-COV-2 Spike RBDMACSp6 binding to hACE2
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7fdg
Q-score: 0.364
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike rbdmacsp6-hace2 complex (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-COV-2 Spike RBDMACSp25 binding to hACE2
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 7fdh
Q-score: 0.433
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike rbdmacsp25-hace2 complex (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-COV-2 Spike RBDMACSp36 binding to hACE2
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 7fdi
Q-score: 0.492
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Sars-cov-2 spike rbdmacsp36-hace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-COV-2 Spike RBDMACSp36 binding to mACE2
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7fdk
Q-score: 0.442
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike rbdmacsp36-mace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Complex of SARS-CoV-2 spike trimer with its neutralizing antibody HB27
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7cyp
Q-score: 0.345
Zhu L, Deng YQ, Zhang RR, Cui Z, Sun CY, Fan CF, Xing X, Huang W, Chen Q, Zhang NN, Ye Q, Cao TS, Wang N, Wang L, Cao L, Wang H, Kong D, Ma J, Luo C, Zhang Y, Nie J, Sun Y, Lv Z, Shaw N, Li Q, Li XF, Hu J, Xie L, Rao Z, Wang Y, Wang X, Qin CF
Natl Sci Rev (2021) 8 pp. nwaa297-nwaa297 [ DOI: doi:10.1093/nsr/nwaa297 Pubmed: 34676096 ]
- Complex of sars-cov-2 spike trimer with its neutralizing antibody hb27 (Complex)
- Heavy chain of hb27 (12 kDa, Protein from Homo sapiens)
- Hb27 antibody (Complex from Homo sapiens)
- Light chain of hb27 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike trimer (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
The structure of FC08 Fab-hA.CE2-RBD complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7dx4
Q-score: 0.425
Zhang L, Cao L, Gao XS, Zheng BY, Deng YQ, Li JX, Feng R, Bian Q, Guo XL, Wang N, Qiu HY, Wang L, Cui Z, Ye Q, Chen G, Lu KK, Chen Y, Chen YT, Pan HX, Yu J, Yao W, Zhu BL, Chen J, Liu Y, Qin CF, Wang X, Zhu FC
Natl Sci Rev (2021) 8 pp. nwab053-nwab053 [ Pubmed: 34676098 DOI: doi:10.1093/nsr/nwab053 ]
- Spike protein s1 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- Fc08 fab (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Severe acute respiratory syndrome coronavirus 2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of fc08 fab (11 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of fc08 fab (13 kDa, Protein from Homo sapiens)