SARS-COV-2 Spike RBDMACSp6 binding to hACE2
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7fdg
Q-score: 0.364
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike rbdmacsp6-hace2 complex (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-COV-2 Spike RBDMACSp25 binding to hACE2
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 7fdh
Q-score: 0.433
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike rbdmacsp25-hace2 complex (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-COV-2 Spike RBDMACSp36 binding to hACE2
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 7fdi
Q-score: 0.492
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Sars-cov-2 spike rbdmacsp36-hace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-COV-2 Spike RBDMACSp36 binding to mACE2
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7fdk
Q-score: 0.442
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike rbdmacsp36-mace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Complex of SARS-CoV-2 spike trimer with its neutralizing antibody HB27
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7cyp
Q-score: 0.345
Zhu L, Deng YQ, Zhang RR, Cui Z, Sun CY, Fan CF, Xing X, Huang W, Chen Q, Zhang NN, Ye Q, Cao TS, Wang N, Wang L, Cao L, Wang H, Kong D, Ma J, Luo C, Zhang Y, Nie J, Sun Y, Lv Z, Shaw N, Li Q, Li XF, Hu J, Xie L, Rao Z, Wang Y, Wang X, Qin CF
Natl Sci Rev (2021) 8 pp. nwaa297-nwaa297 [ DOI: doi:10.1093/nsr/nwaa297 Pubmed: 34676096 ]
- Complex of sars-cov-2 spike trimer with its neutralizing antibody hb27 (Complex)
- Heavy chain of hb27 (12 kDa, Protein from Homo sapiens)
- Hb27 antibody (Complex from Homo sapiens)
- Light chain of hb27 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike trimer (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
The structure of FC08 Fab-hA.CE2-RBD complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7dx4
Q-score: 0.425
Zhang L, Cao L, Gao XS, Zheng BY, Deng YQ, Li JX, Feng R, Bian Q, Guo XL, Wang N, Qiu HY, Wang L, Cui Z, Ye Q, Chen G, Lu KK, Chen Y, Chen YT, Pan HX, Yu J, Yao W, Zhu BL, Chen J, Liu Y, Qin CF, Wang X, Zhu FC
Natl Sci Rev (2021) 8 pp. nwab053-nwab053 [ Pubmed: 34676098 DOI: doi:10.1093/nsr/nwab053 ]
- Spike protein s1 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- Fc08 fab (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Severe acute respiratory syndrome coronavirus 2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of fc08 fab (11 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of fc08 fab (13 kDa, Protein from Homo sapiens)
A proof of concept for neutralizing antibody-guided vaccine design against SARS-CoV-2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7d4g
Q-score: 0.285
Zhang L, Cao L, Gao XS, Zheng BY, Deng YQ, Li JX, Feng R, Bian Q, Guo XL, Wang N, Qiu HY, Wang L, Cui Z, Ye Q, Chen G, Lu KK, Chen Y, Chen YT, Pan HX, Yu J, Yao W, Zhu BL, Chen J, Liu Y, Qin CF, Wang X, Zhu FC
Natl Sci Rev (2021) 8 pp. nwab053-nwab053 [ Pubmed: 34676098 DOI: doi:10.1093/nsr/nwab053 ]
- Spike glycoprotein s1 (31 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (Complex from Homo sapiens)
- Fc05 fab binds to sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of fc05 fab (13 kDa, Protein from Homo sapiens)
- Light chain of fc05 fab (11 kDa, Protein from Homo sapiens)
- Fc05 fab (Complex)
SARS-CoV-2 S trimer with one RBD in the open state and complexed with one H014 Fab.
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 7cac
Q-score: 0.327
Lv Z, Deng YQ, Ye Q, Cao L, Sun CY, Fan C, Huang W, Sun S, Sun Y, Zhu L, Chen Q, Wang N, Nie J, Cui Z, Zhu D, Shaw N, Li XF, Li Q, Xie L, Wang Y, Rao Z, Qin CF, Wang X
Science (2020) 369 pp. 1505-1509 [ Pubmed: 32703908 DOI: doi:10.1126/science.abc5881 ]
- Light chain of h014 fab (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike glycoprotein complex with h014 fab (680 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- H014 fab (Complex)
- Heavy chain of h014 fab (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike glycoprotein (Complex from Homo sapiens)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)