LAT1-CD98hc complex bound to MEM-108 Fab
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 6jmq
Q-score: 0.487
Lee Y, Wiriyasermkul P, Jin C, Quan L, Ohgaki R, Okuda S, Kusakizako T, Nishizawa T, Oda K, Ishitani R, Yokoyama T, Nakane T, Shirouzu M, Endou H, Nagamori S, Kanai Y, Nureki O
Nat Struct Mol Biol (2019) 26 pp. 510-517 [ Pubmed: 31160781 DOI: doi:10.1038/s41594-019-0237-7 ]
- Antibody (23 kDa, Protein from Mus musculus)
- 4f2 cell-surface antigen heavy chain (68 kDa, Protein from Homo sapiens)
- Antibody (22 kDa, Protein from Mus musculus)
- Cholesterol (386 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Large neutral amino acids transporter small subunit 1 (56 kDa, Protein from Homo sapiens)
- Lat1-cd98hc complex bound to mem-108 fab (175 MDa, Complex from Homo sapiens)
CD98hc extracellular domain bound to HBJ127 Fab and MEM-108 Fab
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6jmr
Q-score: 0.398
Lee Y, Wiriyasermkul P, Jin C, Quan L, Ohgaki R, Okuda S, Kusakizako T, Nishizawa T, Oda K, Ishitani R, Yokoyama T, Nakane T, Shirouzu M, Endou H, Nagamori S, Kanai Y, Nureki O
Nat Struct Mol Biol (2019) 26 pp. 510-517 [ Pubmed: 31160781 DOI: doi:10.1038/s41594-019-0237-7 ]
- Antibody (24 kDa, Protein from Mus musculus)
- Antibody (23 kDa, Protein from Mus musculus)
- 4f2 cell-surface antigen heavy chain (68 kDa, Protein from Homo sapiens)
- Antibody (22 kDa, Protein from Mus musculus)
- Cd98hc extracellular domain bound to mem-108 fab and hbj127 fab (225 MDa, Complex from Homo sapiens)
- Antibody (23 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 6.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 5hnx
Q-score: 0.138
Yamagishi M, Shigematsu H, Yokoyama T, Kikkawa M, Sugawa M, Aoki M, Shirouzu M, Yajima J, Nitta R
Structure (2016) 24 pp. 1322-1334 [ DOI: doi:10.1016/j.str.2016.05.021 Pubmed: 27452403 ]
- Tubulin alpha-1b chain (Complex from Bos taurus)
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Minus-end directed ncd chimera nkn664 in the amppnp state complexed with gdp-taxol microtubule (Complex)
- Protein claret segregational,kinesin-1/kinesin-14,protein claret segregational (Complex)
- Tubulin beta-2b chain (Complex from Bos taurus)
- Protein claret segregational,kinesin-1/kinesin-14,protein claret segregational (41 kDa, Protein from Drosophila melanogaster)
- Tubulin alpha-1b chain (50 kDa, Protein from Bos taurus)
- Taxol (853 Da, Ligand)
- Tubulin beta-2b chain (49 kDa, Protein from Bos taurus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
Structural basis of backwards motion in kinesin-14: plus-end directed nKn669 in the AMPPNP state
Resolution: 6.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 5hny
Q-score: 0.145
Yamagishi M, Shigematsu H, Yokoyama T, Kikkawa M, Sugawa M, Aoki M, Shirouzu M, Yajima J, Nitta R
Structure (2016) 24 pp. 1322-1334 [ DOI: doi:10.1016/j.str.2016.05.021 Pubmed: 27452403 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Tubulin alpha-1b chain (48 kDa, Protein from Bos taurus)
- Tubulin beta-2b chain (47 kDa, Protein from Bos taurus)
- Tubulin alpha-1b chain (Complex)
- Taxol (853 Da, Ligand)
- Protein claret segregational,plus-end directed kinesin-1/kinesin-14,protein claret segregational (Complex)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta-2b chain (Complex)
- Protein claret segregational, kinesin-1/kinesin-14, protein claret segregational (41 kDa, Protein from Drosophila melanogaster)
- Plus-end directed ncd chimera nkn669 in the amppnp state complexed with gdp-taxol microtubule (Complex)
Resolution: 5.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 5hnz
Q-score: 0.144
Yamagishi M, Shigematsu H, Yokoyama T, Kikkawa M, Sugawa M, Aoki M, Shirouzu M, Yajima J, Nitta R
Structure (2016) 24 pp. 1322-1334 [ DOI: doi:10.1016/j.str.2016.05.021 Pubmed: 27452403 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Plus-end directed ncd chimera nkn669 in the nucleotide-free state complexed with gdp-taxol microtubule (Complex)
- Tubulin alpha-1b chain (Complex)
- Protein claret segregational,protein claret segregational,plus-end directed kinesin-1/kinesin-14,protein claret segregational,protein claret segregational (41 kDa, Protein from Drosophila melanogaster)
- Tubulin alpha-1b chain (50 kDa, Protein from Bos taurus)
- Taxol (853 Da, Ligand)
- Tubulin beta-2b chain (49 kDa, Protein from Bos taurus)
- Protein claret segregational,plus-end directed kinesin-1/kinesin-14,protein claret segregational (Complex)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta-2b chain (Complex)