Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map
Resolution: 4.91 Å
EM Method: Single-particle
Fitted PDBs: 8xm7
Q-score: 0.203
Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
J Biol Chem (2024) 300 pp. 107459-107459 [ DOI: doi:10.1016/j.jbc.2024.107459 Pubmed: 38857861 ]
- Magnesium ion (24 Da, Ligand)
- Dedicator of cytokinesis protein 5 (191 kDa, Protein from Homo sapiens)
- Engulfment and cell motility protein 1 (84 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rho-related gtp-binding protein rhog (22 kDa, Protein from Homo sapiens)
- Rhog/dock5/elmo1 complex (Complex from Homo sapiens)
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
Resolution: 4.66 Å
EM Method: Single-particle
Fitted PDBs: 8zj2
Q-score: 0.231
Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
J Biol Chem (2024) 300 pp. 107459-107459 [ Pubmed: 38857861 DOI: doi:10.1016/j.jbc.2024.107459 ]
- Rho-related gtp-binding protein rhog (22 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Engulfment and cell motility protein 1 (84 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rhog/dock5/elmo1/rac1 complex (Complex from Homo sapiens)
- Ras-related c3 botulinum toxin substrate 1 (20 kDa, Protein from Homo sapiens)
- Dedicator of cytokinesis protein 5 (191 kDa, Protein from Homo sapiens)
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 1)
Resolution: 4.23 Å
EM Method: Single-particle
Fitted PDBs: 8zji
Q-score: 0.192
Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
J Biol Chem (2024) 300 pp. 107459-107459 [ DOI: doi:10.1016/j.jbc.2024.107459 Pubmed: 38857861 ]
- Dedicator of cytokinesis protein 5 (191 kDa, Protein from Homo sapiens)
- Engulfment and cell motility protein 1 (84 kDa, Protein from Homo sapiens)
- Dock5/elmo1/rac1 complex (Complex from Homo sapiens)
- Ras-related c3 botulinum toxin substrate 1 (20 kDa, Protein from Homo sapiens)
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)
Resolution: 4.23 Å
EM Method: Single-particle
Fitted PDBs: 8zjj
Q-score: 0.211
Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
J Biol Chem (2024) 300 pp. 107459-107459 [ DOI: doi:10.1016/j.jbc.2024.107459 Pubmed: 38857861 ]
- Dedicator of cytokinesis protein 5 (191 kDa, Protein from Homo sapiens)
- Engulfment and cell motility protein 1 (84 kDa, Protein from Homo sapiens)
- Dock5/elmo1/rac1 complex (Complex from Homo sapiens)
- Ras-related c3 botulinum toxin substrate 1 (20 kDa, Protein from Homo sapiens)
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 3)
Resolution: 4.23 Å
EM Method: Single-particle
Fitted PDBs: 8zjk
Q-score: 0.203
Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
J Biol Chem (2024) 300 pp. 107459-107459 [ DOI: doi:10.1016/j.jbc.2024.107459 Pubmed: 38857861 ]
- Dedicator of cytokinesis protein 5 (191 kDa, Protein from Homo sapiens)
- Engulfment and cell motility protein 1 (84 kDa, Protein from Homo sapiens)
- Dock5/elmo1/rac1 complex (Complex from Homo sapiens)
- Ras-related c3 botulinum toxin substrate 1 (20 kDa, Protein from Homo sapiens)
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 4)
Resolution: 4.31 Å
EM Method: Single-particle
Fitted PDBs: 8zjl
Q-score: 0.211
Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
J Biol Chem (2024) 300 pp. 107459-107459 [ DOI: doi:10.1016/j.jbc.2024.107459 Pubmed: 38857861 ]
- Dedicator of cytokinesis protein 5 (191 kDa, Protein from Homo sapiens)
- Engulfment and cell motility protein 1 (84 kDa, Protein from Homo sapiens)
- Dock5/elmo1/rac1 complex (Complex from Homo sapiens)
- Ras-related c3 botulinum toxin substrate 1 (20 kDa, Protein from Homo sapiens)
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 5)
Resolution: 4.52 Å
EM Method: Single-particle
Fitted PDBs: 8zjm
Q-score: 0.142
Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
J Biol Chem (2024) 300 pp. 107459-107459 [ DOI: doi:10.1016/j.jbc.2024.107459 Pubmed: 38857861 ]
- Dedicator of cytokinesis protein 5 (191 kDa, Protein from Homo sapiens)
- Engulfment and cell motility protein 1 (84 kDa, Protein from Homo sapiens)
- Dock5/elmo1/rac1 complex (Complex from Homo sapiens)
- Ras-related c3 botulinum toxin substrate 1 (20 kDa, Protein from Homo sapiens)
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Resolution: 4.76 Å
EM Method: Single-particle
Fitted PDBs: 8jhk
Q-score: 0.285
Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M
J Biol Chem (2024) 300 pp. 107459-107459 [ DOI: doi:10.1016/j.jbc.2024.107459 Pubmed: 38857861 ]
- Dedicator of cytokinesis protein 5 (191 kDa, Protein from Homo sapiens)
- Dock5/elmo1 complex (Complex from Homo sapiens)
- Engulfment and cell motility protein 1 (84 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7dpa
Q-score: 0.239
Kukimoto-Niino M, Katsura K, Kaushik R, Ehara H, Yokoyama T, Uchikubo-Kamo T, Nakagawa R, Mishima-Tsumagari C, Yonemochi M, Ikeda M, Hanada K, Zhang KYJ, Shirouzu M
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abg3147 Pubmed: 34290093 ]
- Dedicator of cytokinesis protein 5 (191 kDa, Protein from Homo sapiens)
- Engulfment and cell motility protein 1 (84 kDa, Protein from Homo sapiens)
- Ras-related c3 botulinum toxin substrate 1 (20 kDa, Protein from Homo sapiens)
- Elmo1-dock5-rac1 (Complex from Homo sapiens)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7d43
Q-score: 0.385
Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, Perera LA, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T, Ron D
Mol Cell (2021) 81 pp. 88- [ DOI: doi:10.1016/j.molcel.2020.10.031 Pubmed: 33220178 ]
- Eukaryotic translation initiation factor 2 subunit 3 (51 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 2 (38 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Eif2b (Complex from Homo sapiens)
- Eif2(ap) (Complex from Homo sapiens)
- Complex of eif2b with eif2(ap) (Complex)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)