EMDB: Cryo electron microscopy map of the ATP-gated rat P2X7 ion channel in the apo, closed state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6u9v
Q-score: 0.503
McCarthy AE, Yoshioka C, Mansoor SE
Cell (2019) 179 pp. 659-670.e13 [ DOI: doi:10.1016/j.cell.2019.09.017 Pubmed: 31587896 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- O-[(r)-[(2s)-2-(hexadecanoyloxy)-3-(octadecanoyloxy)propoxy](hydroxy)phosphoryl]-d-serine (764 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- P2x7 receptor ion channel (Complex from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- P2x purinoceptor 7 (69 kDa, Protein from Rattus norvegicus)
Cryo electron microscopy map of the ATP-gated rat P2X7 ion channel in the ATP-bound, open state
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6u9w
Q-score: 0.523
McCarthy AE, Yoshioka C, Mansoor SE
Cell (2019) 179 pp. 659-670.e13 [ DOI: doi:10.1016/j.cell.2019.09.017 Pubmed: 31587896 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- O-[(r)-[(2s)-2-(hexadecanoyloxy)-3-(octadecanoyloxy)propoxy](hydroxy)phosphoryl]-d-serine (764 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- P2x7 receptor ion channel (Complex from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- P2x purinoceptor 7 (69 kDa, Protein from Rattus norvegicus)
Cryo-EM structure of GluN1/GluN2B NMDA receptor in the glutamate/glycine-bound conformation
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 5iou
Q-score: 0.223
Zhu S, Stein RA, Yoshioka C, Lee CH, Goehring A, Mchaourab HS, Gouaux E
Cell (2016) 165 pp. 704-714 [ DOI: doi:10.1016/j.cell.2016.03.028 Pubmed: 27062927 ]
- Glycine (75 Da, Ligand)
- Ionotropic glutamate receptor subunit nr2b (93 kDa, Protein from Xenopus laevis)
- Glutamic acid (147 Da, Ligand)
- Glun1-glun2b nmda receptor (Cellular component from Xenopus laevis)
- N-methyl-d-aspartate receptor subunit nr1-8a (92 kDa, Protein from Xenopus laevis)
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 5iov
Q-score: 0.203
Zhu S, Stein RA, Yoshioka C, Lee CH, Goehring A, Mchaourab HS, Gouaux E
Cell (2016) 165 pp. 704-714 [ DOI: doi:10.1016/j.cell.2016.03.028 Pubmed: 27062927 ]
- Glun1-glun2b receptor in the complex with glycine and glutamate plus allosteric inhibitor ro25-6981 (Cellular component from Xenopus laevis)
- Glycine (75 Da, Ligand)
- 4-[(1r,2s)-3-(4-benzylpiperidin-1-yl)-1-hydroxy-2-methylpropyl]phenol (339 Da, Ligand)
- Ionotropic glutamate receptor subunit nr2b (93 kDa, Protein from Xenopus laevis)
- Glutamic acid (147 Da, Ligand)
- N-methyl-d-aspartate receptor subunit nr1-8a (92 kDa, Protein from Xenopus laevis)