Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 9bcx
Q-score: 0.133
Faull SV, Barbon M, Mossler A, Yuan Z, Bai L, Reuter LM, Riera A, Winkler C, Magdalou I, Peach M, Li H, Speck C
Nat Commun (2025) 16 pp. 14-14 [ Pubmed: 39747125 DOI: doi:10.1038/s41467-024-55479-1 ]
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae)
- Origin recognition complex subunit 5 (55 kDa, Protein from Saccharomyces cerevisiae)
- Origin recognition complex subunit 3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Origin recognition complex subunit 2 (71 kDa, Protein from Saccharomyces cerevisiae)
- Cell division control protein 6 (58 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm5 (86 kDa, Protein from Saccharomyces cerevisiae)
- Tah11 isoform 1 (68 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Origin recognition complex subunit 1 (104 kDa, Protein from Saccharomyces cerevisiae)
- Origin recognition complex subunit 4 (60 kDa, Protein from Saccharomyces cerevisiae)
- Dna (39-mer) (12 kDa, DNA from synthetic construct)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Dna (39-mer) (11 kDa, DNA from synthetic construct)
- Origin recognition complex subunit 6 (50 kDa, Protein from Saccharomyces cerevisiae)
- Orc-cdc6-mcm2-7-dsdna (Complex from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of S. cerevisiae PolE-core-DNA
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9b8r
Q-score: 0.332
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ DOI: doi:10.1126/science.adk5901 Pubmed: 39088616 ]
- Primer dna (3 kDa, DNA from DNA molecule)
- Pole-core-dna complex (Complex from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- Dna polymerase epsilon catalytic subunit (133 kDa, Protein from Saccharomyces cerevisiae)
- Template dna (3 kDa, DNA from DNA molecule)
Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA complex in Apo state conformation I
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8tw7
Q-score: 0.488
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ DOI: doi:10.1126/science.adk5901 Pubmed: 39088616 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Replication factor c subunit 2 (38 kDa, Protein from Saccharomyces cerevisiae)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 4 (35 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 3 (36 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 18 (30 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Proliferating cell nuclear antigen (28 kDa, Protein from Saccharomyces cerevisiae)
- Ctf18-rfc-pcna complex (Complex from Saccharomyces cerevisiae)
Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA complex in Apo state conformation I
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8tw8
Q-score: 0.426
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ DOI: doi:10.1126/science.adk5901 Pubmed: 39088616 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Replication factor c subunit 2 (38 kDa, Protein from Saccharomyces cerevisiae)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 4 (35 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 3 (36 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 18 (30 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Proliferating cell nuclear antigen (28 kDa, Protein from Saccharomyces cerevisiae)
- Ctf18-rfc-pcna complex (Complex from Saccharomyces cerevisiae)
Cryo-EM structure of S. cerevisiae PolE-Ctf18-8-1-DNA
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8tw9
Q-score: 0.438
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ DOI: doi:10.1126/science.adk5901 Pubmed: 39088616 ]
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 18 (3 kDa, Protein from Saccharomyces cerevisiae)
- Sister chromatid cohesion protein dcc1 (44 kDa, Protein from Saccharomyces cerevisiae)
- Primer dna (2 kDa, DNA from synthetic construct)
- Template dna (4 kDa, DNA from synthetic construct)
- Iron/sulfur cluster (351 Da, Ligand)
- Chromosome transmission fidelity protein 8 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ctf18-rfc-pcna complex (Complex from Saccharomyces cerevisiae)
Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA-PolE-DNA complex
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8twa
Q-score: 0.349
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ DOI: doi:10.1126/science.adk5901 Pubmed: 39088616 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Replication factor c subunit 2 (38 kDa, Protein from Saccharomyces cerevisiae)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 18 (3 kDa, Protein from Saccharomyces cerevisiae)
- Sister chromatid cohesion protein dcc1 (44 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 4 (35 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 18 (84 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 3 (36 kDa, Protein from Saccharomyces cerevisiae)
- Primer dna (2 kDa, DNA from synthetic construct)
- Template dna (4 kDa, DNA from synthetic construct)
- Iron/sulfur cluster (351 Da, Ligand)
- Chromosome transmission fidelity protein 8 (15 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Ctf18-rfc-pcna-pole-dna complex (Complex from Saccharomyces cerevisiae)
- Proliferating cell nuclear antigen (28 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA-DNA complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8twb
Q-score: 0.482
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ DOI: doi:10.1126/science.adk5901 Pubmed: 39088616 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Replication factor c subunit 2 (38 kDa, Protein from Saccharomyces cerevisiae)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
- Template dna (5 kDa, DNA from synthetic construct)
- Replication factor c subunit 4 (35 kDa, Protein from Saccharomyces cerevisiae)
- Primer dna (5 kDa, DNA from synthetic construct)
- Replication factor c subunit 3 (36 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 18 (30 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Proliferating cell nuclear antigen (28 kDa, Protein from Saccharomyces cerevisiae)
- Ctf18-rfc-pcna complex (Complex from Saccharomyces cerevisiae)
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8k42
Q-score: 0.59
Li Z, Xia H, Rao G, Fu Y, Chong T, Tian K, Yuan Z, Cao S
Nat Commun (2024) 15 pp. 2284-2284 [ DOI: doi:10.1038/s41467-024-46624-x Pubmed: 38480794 ]
- Vp8 (32 kDa, Protein from Banna virus)
- Vp2 (108 kDa, Protein from Banna virus)
- Banna virus (Virus from Banna virus)
- Vp10 (28 kDa, Protein from Banna virus)
- Vp4 (69 kDa, Protein from Banna virus)
- Vp9 (30 kDa, Protein from Banna virus)
In situ structure of RNA-dependent RNA polymerase in full BAV particles
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8k43
Q-score: 0.516
Li Z, Xia H, Rao G, Fu Y, Chong T, Tian K, Yuan Z, Cao S
Nat Commun (2024) 15 pp. 2284-2284 [ DOI: doi:10.1038/s41467-024-46624-x Pubmed: 38480794 ]
- Vp2 (108 kDa, Protein from Banna virus)
- Banna virus (Virus from Banna virus)
- Rna-directed rna polymerase (fragment) (138 kDa, Protein from Banna virus)
Structure of VP9 in Banna virus
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8k44
Q-score: 0.419
Li Z, Xia H, Rao G, Fu Y, Chong T, Tian K, Yuan Z, Cao S
Nat Commun (2024) 15 pp. 2284-2284 [ DOI: doi:10.1038/s41467-024-46624-x Pubmed: 38480794 ]
- Banna virus (Virus from Banna virus)
- Vp9 (30 kDa, Protein from Banna virus)