Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA complex in Apo state conformation I
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8tw7
Q-score: 0.488
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ Pubmed: 39088616 DOI: doi:10.1126/science.adk5901 ]
- Chromosome transmission fidelity protein 18 (30 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Replication factor c subunit 3 (36 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Replication factor c subunit 4 (35 kDa, Protein from Saccharomyces cerevisiae)
- Ctf18-rfc-pcna complex (Complex from Saccharomyces cerevisiae)
- Replication factor c subunit 2 (38 kDa, Protein from Saccharomyces cerevisiae)
- Proliferating cell nuclear antigen (28 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA complex in Apo state conformation I
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8tw8
Q-score: 0.426
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ Pubmed: 39088616 DOI: doi:10.1126/science.adk5901 ]
- Chromosome transmission fidelity protein 18 (30 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Replication factor c subunit 3 (36 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Replication factor c subunit 4 (35 kDa, Protein from Saccharomyces cerevisiae)
- Ctf18-rfc-pcna complex (Complex from Saccharomyces cerevisiae)
- Replication factor c subunit 2 (38 kDa, Protein from Saccharomyces cerevisiae)
- Proliferating cell nuclear antigen (28 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of S. cerevisiae PolE-Ctf18-8-1-DNA
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8tw9
Q-score: 0.438
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ Pubmed: 39088616 DOI: doi:10.1126/science.adk5901 ]
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 18 (3 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- Primer dna (2 kDa, DNA from synthetic construct)
- Ctf18-rfc-pcna complex (Complex from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 8 (15 kDa, Protein from Saccharomyces cerevisiae)
- Template dna (4 kDa, DNA from synthetic construct)
- Sister chromatid cohesion protein dcc1 (44 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA-PolE-DNA complex
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8twa
Q-score: 0.349
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ Pubmed: 39088616 DOI: doi:10.1126/science.adk5901 ]
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 18 (84 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Replication factor c subunit 3 (36 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 18 (3 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Ctf18-rfc-pcna-pole-dna complex (Complex from Saccharomyces cerevisiae)
- Replication factor c subunit 4 (35 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- Proliferating cell nuclear antigen (28 kDa, Protein from Saccharomyces cerevisiae)
- Primer dna (2 kDa, DNA from synthetic construct)
- Replication factor c subunit 2 (38 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome transmission fidelity protein 8 (15 kDa, Protein from Saccharomyces cerevisiae)
- Template dna (4 kDa, DNA from synthetic construct)
- Sister chromatid cohesion protein dcc1 (44 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA-DNA complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8twb
Q-score: 0.482
Yuan Z, Georgescu R, Yao NY, Yurieva O, O'Donnell ME, Li H
Science (2024) 385 pp. eadk5901-eadk5901 [ Pubmed: 39088616 DOI: doi:10.1126/science.adk5901 ]
- Chromosome transmission fidelity protein 18 (30 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Replication factor c subunit 3 (36 kDa, Protein from Saccharomyces cerevisiae)
- Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Replication factor c subunit 4 (35 kDa, Protein from Saccharomyces cerevisiae)
- Template dna (5 kDa, DNA from synthetic construct)
- Primer dna (5 kDa, DNA from synthetic construct)
- Ctf18-rfc-pcna complex (Complex from Saccharomyces cerevisiae)
- Replication factor c subunit 2 (38 kDa, Protein from Saccharomyces cerevisiae)
- Proliferating cell nuclear antigen (28 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8k42
Q-score: 0.59
Li Z, Xia H, Rao G, Fu Y, Chong T, Tian K, Yuan Z, Cao S
Nat Commun (2024) 15 pp. 2284-2284 [ Pubmed: 38480794 DOI: doi:10.1038/s41467-024-46624-x ]
- Vp4 (69 kDa, Protein from Banna virus)
- Banna virus (Virus from Banna virus)
- Vp8 (32 kDa, Protein from Banna virus)
- Vp2 (108 kDa, Protein from Banna virus)
- Vp10 (28 kDa, Protein from Banna virus)
- Vp9 (30 kDa, Protein from Banna virus)
In situ structure of RNA-dependent RNA polymerase in full BAV particles
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8k43
Q-score: 0.516
Li Z, Xia H, Rao G, Fu Y, Chong T, Tian K, Yuan Z, Cao S
Nat Commun (2024) 15 pp. 2284-2284 [ Pubmed: 38480794 DOI: doi:10.1038/s41467-024-46624-x ]
- Banna virus (Virus from Banna virus)
- Rna-directed rna polymerase (fragment) (138 kDa, Protein from Banna virus)
- Vp2 (108 kDa, Protein from Banna virus)
Structure of VP9 in Banna virus
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8k44
Q-score: 0.419
Li Z, Xia H, Rao G, Fu Y, Chong T, Tian K, Yuan Z, Cao S
Nat Commun (2024) 15 pp. 2284-2284 [ Pubmed: 38480794 DOI: doi:10.1038/s41467-024-46624-x ]
- Banna virus (Virus from Banna virus)
- Vp9 (30 kDa, Protein from Banna virus)
Structure of partial Banna virus
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8k49
Q-score: 0.564
Li Z, Xia H, Rao G, Fu Y, Chong T, Tian K, Yuan Z, Cao S
Nat Commun (2024) 15 pp. 2284-2284 [ Pubmed: 38480794 DOI: doi:10.1038/s41467-024-46624-x ]
- Vp4 (69 kDa, Protein from Banna virus)
- Banna virus (Virus from Banna virus)
- Vp8 (32 kDa, Protein from Banna virus)
- Vp2 (108 kDa, Protein from Banna virus)
- Vp10 (28 kDa, Protein from Banna virus)
- Vp9 (30 kDa, Protein from Banna virus)
Resolution: 5.7 Å
EM Method: Single-particle
Fitted PDBs: 8w9p
Q-score: 0.203
Li Z, Xia H, Rao G, Fu Y, Chong T, Tian K, Yuan Z, Cao S
Nat Commun (2024) 15 pp. 2284-2284 [ Pubmed: 38480794 DOI: doi:10.1038/s41467-024-46624-x ]
- Vp4 (69 kDa, Protein from Banna virus)
- Banna virus (Virus from Banna virus)
- Vp8 (32 kDa, Protein from Banna virus)
- Vp2 (108 kDa, Protein from Banna virus)
- Vp10 (28 kDa, Protein from Banna virus)
- Vp9 (30 kDa, Protein from Banna virus)