Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7xog
Q-score: 0.294
Tan S, Zhao J, Hu X, Li Y, Wu Z, Lu G, Yu Z, Du B, Liu Y, Li L, Chen Y, Li Y, Yao Y, Zhang X, Rao J, Gao G, Peng Y, Liu H, Yuan Z, Liu J, Wang Q, Hu H, Gao X, Zhou H, Yu H, Xu Y, Yu W, Feng L, Wang M, Shan C, Lu J, Lin J
Sci Bull (Beijing) (2023) 68 pp. 3192-3206 [ Pubmed: 37993332 DOI: doi:10.1016/j.scib.2023.11.024 ]
- Spike glycoprotein,peptide (142 kDa, Protein from synthetic construct)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Severe acute respiratory syndrome coronavirus (Complex from Severe acute respiratory syndrome coronavirus)
- Alpha-d-mannopyranose (180 Da, Ligand)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7xoe
Q-score: 0.301
Tan S, Zhao J, Hu X, Li Y, Wu Z, Lu G, Yu Z, Du B, Liu Y, Li L, Chen Y, Li Y, Yao Y, Zhang X, Rao J, Gao G, Peng Y, Liu H, Yuan Z, Liu J, Wang Q, Hu H, Gao X, Zhou H, Yu H, Xu Y, Yu W, Feng L, Wang M, Shan C, Lu J, Lin J
Sci Bull (Beijing) (2023) 68 pp. 3192-3206 [ Pubmed: 37993332 DOI: doi:10.1016/j.scib.2023.11.024 ]
Local construction of SARS-CoV-2 S protein RBD in complex with XG014 Fab
Liu Z, Xu W, Chen Z, Fu W, Zhan W, Gao Y, Zhou J, Zhou Y, Wu J, Wang Q, Zhang X, Hao A, Wu W, Zhang Q, Li Y, Fan K, Chen R, Jiang Q, Mayer CT, Schoofs T, Xie Y, Jiang S, Wen Y, Yuan Z, Wang K, Lu L, Sun L, Wang Q
Protein Cell (2022) 13 pp. 655-675 [ Pubmed: 34554412 DOI: doi:10.1007/s13238-021-00871-6 ]
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 7v26
Q-score: 0.328
Liu Z, Xu W, Chen Z, Fu W, Zhan W, Gao Y, Zhou J, Zhou Y, Wu J, Wang Q, Zhang X, Hao A, Wu W, Zhang Q, Li Y, Fan K, Chen R, Jiang Q, Mayer CT, Schoofs T, Xie Y, Jiang S, Wen Y, Yuan Z, Wang K, Lu L, Sun L, Wang Q
Protein Cell (2022) 13 pp. 655-675 [ Pubmed: 34554412 DOI: doi:10.1007/s13238-021-00871-6 ]
- Xg005-bound sars-cov-2 s (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xg005 heavy chain (24 kDa, Protein from Homo sapiens)
- Xg005 light chain (22 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 s (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Xg005 (Complex)
SARS-CoV-2 Spike trimer in complex with XG014 Fab
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7v2a
Q-score: 0.482
Liu Z, Xu W, Chen Z, Fu W, Zhan W, Gao Y, Zhou J, Zhou Y, Wu J, Wang Q, Zhang X, Hao A, Wu W, Zhang Q, Li Y, Fan K, Chen R, Jiang Q, Mayer CT, Schoofs T, Xie Y, Jiang S, Wen Y, Yuan Z, Wang K, Lu L, Sun L, Wang Q
Protein Cell (2022) 13 pp. 655-675 [ Pubmed: 34554412 DOI: doi:10.1007/s13238-021-00871-6 ]
- Xg014 in complex with s trimer of sars-cov-2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- The light chain of xg014 fab (22 kDa, Protein from Homo sapiens)
- Xg014 (Complex)
- The heavy chain of xg014 (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S trimer of sars-cov-2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7e3k
Q-score: 0.298
Li T, Han X, Gu C, Guo H, Zhang H, Wang Y, Hu C, Wang K, Liu F, Luo F, Zhang Y, Hu J, Wang W, Li S, Hao Y, Shen M, Huang J, Long Y, Song S, Wu R, Mu S, Chen Q, Gao F, Wang J, Long S, Li L, Wu Y, Gao Y, Xu W, Cai X, Qu D, Zhang Z, Zhang H, Li N, Gao Q, Zhang G, He C, Wang W, Ji X, Tang N, Yuan Z, Xie Y, Yang H, Zhang B, Huang A, Jin A
Nat Commun (2021) 12 pp. 6304-6304 [ Pubmed: 34728625 DOI: doi:10.1038/s41467-021-26539-7 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 13g9 heavy chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (Complex from Homo sapiens)
- Fab (Complex)
- Sars-cov-2 spike glycoprotein complex with 13g9 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 13g9 light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7e3l
Q-score: 0.349
Li T, Han X, Gu C, Guo H, Zhang H, Wang Y, Hu C, Wang K, Liu F, Luo F, Zhang Y, Hu J, Wang W, Li S, Hao Y, Shen M, Huang J, Long Y, Song S, Wu R, Mu S, Chen Q, Gao F, Wang J, Long S, Li L, Wu Y, Gao Y, Xu W, Cai X, Qu D, Zhang Z, Zhang H, Li N, Gao Q, Zhang G, He C, Wang W, Ji X, Tang N, Yuan Z, Xie Y, Yang H, Zhang B, Huang A, Jin A
Nat Commun (2021) 12 pp. 6304-6304 [ Pubmed: 34728625 DOI: doi:10.1038/s41467-021-26539-7 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 58g6 heavy chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (Complex from Homo sapiens)
- Fab (Complex)
- 58g6 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike glycoprotein complex with 58g6 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6jcq
Q-score: 0.414
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ Pubmed: 31434885 DOI: doi:10.1038/s41467-019-11668-x ]
- Capsid protein (Complex from Adeno-associated virus - 1)
- Pkd2 (Cellular component from Homo sapiens)
- Dyslexia-associated protein kiaa0319-like protein (9 kDa, Protein from Homo sapiens)
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 1)
- Adeno-associated virus - 1 (Complex)
AAV1 in neutral condition at 3.07 Ang
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 6jcr
Q-score: 0.452
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ Pubmed: 31434885 DOI: doi:10.1038/s41467-019-11668-x ]
- Adeno-associated virus - 1 (Virus from Adeno-associated virus - 1)
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 1)
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 6jcs
Q-score: 0.433
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ Pubmed: 31434885 DOI: doi:10.1038/s41467-019-11668-x ]
- Capsid protein vp1 (Complex from Adeno-associated virus - 5)
- Adeno-associated virus - 5 (Complex)
- Dyslexia-associated protein kiaa0319-like protein (10 kDa, Protein from Homo sapiens)
- Pkd1 (Cellular component from Homo sapiens)
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 5)