Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7y04
Q-score: 0.49
Wen Z, Zhang Y, Zhang B, Hang Y, Xu L, Chen Y, Xie Q, Zhao Q, Zhang L, Li G, Zhao B, Sun F, Zhai Y, Zhu Y
Structure (2023) 31 pp. 295- [ Pubmed: 36649707 DOI: doi:10.1016/j.str.2022.12.013 ]
- Aryl hydrocarbon receptor (46 kDa, Protein from Mus musculus)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Hsp90-ahr-p23 complex (Complex from Mus musculus)
- Prostaglandin e synthase 3 (Complex from Mus musculus)
- Prostaglandin e synthase 3 (20 kDa, Protein from Mus musculus)
- Heat shock protein hsp 90-beta (Complex from Mus musculus)
- Beryllium trifluoride ion (66 Da, Ligand)
- Heat shock protein hsp 90-beta (86 kDa, Protein from Mus musculus)
- Aryl hydrocarbon receptor (Complex)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8h77
Q-score: 0.45
Wen Z, Zhang Y, Zhang B, Hang Y, Xu L, Chen Y, Xie Q, Zhao Q, Zhang L, Li G, Zhao B, Sun F, Zhai Y, Zhu Y
Structure (2023) 31 pp. 295- [ Pubmed: 36649707 DOI: doi:10.1016/j.str.2022.12.013 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Ah receptor-interacting protein (Complex from Mus musculus)
- Prostaglandin e synthase 3 (Complex from Mus musculus)
- Ah receptor-interacting protein (38 kDa, Protein from Mus musculus)
- Prostaglandin e synthase 3 (20 kDa, Protein from Mus musculus)
- Heat shock protein hsp 90-beta (Complex from Mus musculus)
- Aryl hydrocarbon receptor (Complex from Mus musculus)
- Mouse hsp90-ahr-p23-xap2 complex (Complex)
- Beryllium trifluoride ion (66 Da, Ligand)
- Aryl hydrocarbon receptor (50 kDa, Protein from Mus musculus)
- Heat shock protein hsp 90-beta (86 kDa, Protein from Mus musculus)
ACE2 -Targeting Monoclonal Antibody as Potent and Broad-Spectrum Coronavirus Blocker
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7v61
Q-score: 0.366
Chen Y, Zhang YN, Yan R, Wang G, Zhang Y, Zhang ZR, Li Y, Ou J, Chu W, Liang Z, Wang Y, Chen YL, Chen G, Wang Q, Zhou Q, Zhang B, Wang C
Signal Transduct Target Ther (2021) 6 pp. 315-315 [ Pubmed: 34433803 DOI: doi:10.1038/s41392-021-00740-y ]
- 3e8 (23 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ace2-b0at1 complex (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Sodium-dependent neutral amino acid transporter b(0)at1 (73 kDa, Protein from Homo sapiens)
- 3e8 (49 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (93 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
Cryo-EM structure of the spike of SARS-CoV-2 Omicron variant of concern
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 7tb4
Q-score: 0.406
Wang L, Zhou T, Zhang Y, Yang ES, Schramm CA, Shi W, Pegu A, Oloninyi OK, Ransier A, Darko S, Narpala SR, Hatcher C, Martinez DR, Tsybovsky Y, Phung E, Abiona OM, Cale EM, Chang LA, Corbett KS, DiPiazza AT, Gordon IJ, Leung K, Liu T, Mason RD, Nazzari A, Novik L, Olia AS, Doria-Rose NA, Stephens T, Stringham CD, Talana CA, Teng IT, Wagner D, Widge AT, Zhang B, Roederer M, Ledgerwood JE, Ruckwardt TJ, Gaudinski MR, Baric RS, Graham BS, McDermott AB, Douek DC, Kwong PD, Mascola JR, Sullivan NJ, Misasi J
bioRxiv (2021) [ Pubmed: 33655252 DOI: doi:10.1101/2021.02.25.432969 ]
Structure of freshly purified SARS-CoV-2 S2P spike at pH 7.4
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7mtc
Q-score: 0.6
Olia AS, Tsybovsky Y, Chen SJ, Liu C, Nazzari AF, Ou L, Wang L, Kong WP, Leung K, Liu T, Stephens T, Teng IT, Wang S, Yang ES, Zhang B, Zhang Y, Zhou T, Mascola JR, Kwong PD
J Biol Chem (2021) 297 pp. 101127-101127 [ Pubmed: 34461095 DOI: doi:10.1016/j.jbc.2021.101127 ]
Structure of aged SARS-CoV-2 S2P spike at pH 7.4
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7mtd
Q-score: 0.443
Olia AS, Tsybovsky Y, Chen SJ, Liu C, Nazzari AF, Ou L, Wang L, Kong WP, Leung K, Liu T, Stephens T, Teng IT, Wang S, Yang ES, Zhang B, Zhang Y, Zhou T, Mascola JR, Kwong PD
J Biol Chem (2021) 297 pp. 101127-101127 [ Pubmed: 34461095 DOI: doi:10.1016/j.jbc.2021.101127 ]
Structure of SARS-CoV-2 S2P spike at pH 7.4 refolded by low-pH treatment
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7mte
Q-score: 0.523
Olia AS, Tsybovsky Y, Chen SJ, Liu C, Nazzari AF, Ou L, Wang L, Kong WP, Leung K, Liu T, Stephens T, Teng IT, Wang S, Yang ES, Zhang B, Zhang Y, Zhou T, Mascola JR, Kwong PD
J Biol Chem (2021) 297 pp. 101127-101127 [ Pubmed: 34461095 DOI: doi:10.1016/j.jbc.2021.101127 ]
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 7mm0
Q-score: 0.384
Wang L, Zhou T, Zhang Y, Yang ES, Schramm CA, Shi W, Pegu A, Oloniniyi OK, Henry AR, Darko S, Narpala SR, Hatcher C, Martinez DR, Tsybovsky Y, Phung E, Abiona OM, Antia A, Cale EM, Chang LA, Choe M, Corbett KS, Davis RL, DiPiazza AT, Gordon IJ, Hait SH, Hermanus T, Kgagudi P, Laboune F, Leung K, Liu T, Mason RD, Nazzari AF, Novik L, O'Connell S, O'Dell S, Olia AS, Schmidt SD, Stephens T, Stringham CD, Talana CA, Teng IT, Wagner DA, Widge AT, Zhang B, Roederer M, Ledgerwood JE, Ruckwardt TJ, Gaudinski MR, Moore PL, Doria-Rose NA, Baric RS, Graham BS, McDermott AB, Douek DC, Kwong PD, Mascola JR, Sullivan NJ, Misasi J
Science (2021) 373 [ DOI: doi:10.1126/science.abh1766 Pubmed: 34210892 ]
- B1-182.1 fab heavy chain (24 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (132 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- B1-182.1 fab light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike in complex with neutralizing antibody b1-182.1 (539 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SRR2899884.46167H+MEDI8852L fab in complex with Victoria HA
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 7kc1
Q-score: 0.461
Chuang GY, Shen CH, Cheung CS, Gorman J, Creanga A, Joyce MG, Leung K, Rawi R, Wang L, Yang ES, Yang Y, Zhang B, Zhang Y, Kanekiyo M, Zhou T, DeKosky BJ, Graham BS, Mascola JR, Kwong PD
Front Immunol (2021) 12 pp. 662909-662909 [ DOI: doi:10.3389/fimmu.2021.662909 Pubmed: 34135892 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab light chain (22 kDa, Protein from Homo sapiens)
- Hemagglutinin (38 kDa, Protein from Influenza A virus)
- Fab heavy chain (24 kDa, Protein from Homo sapiens)
- Fusion protein of hemagglutinin and envelope glycoprotein (25 kDa, Protein from Human immunodeficiency virus 1)
- Cryo-em structure of srr2899884.46167h+medi8852l fab in complex with victoria ha (Complex from Influenza A virus)
- Cryo-em structure of srr2899884.46167h+medi8852l fab in complex with victoria ha (Complex)
Cryo-EM structure of a biotinylated SARS-CoV-2 spike probe in the prefusion state (RBDs down)
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 6xf5
Q-score: 0.365
Zhou T, Teng IT, Olia AS, Cerutti G, Gorman J, Nazzari A, Shi W, Tsybovsky Y, Wang L, Wang S, Zhang B, Zhang Y, Katsamba PS, Petrova Y, Banach BB, Fahad AS, Liu L, Acevedo SNL, Madan B, de Souza MO, Pan X, Wang P, Wolfe JR, Yin M, Ho DD, Phung E, DiPiazza A, Chang L, Abiona O, Corbett KS, DeKosky BJ, Graham BS, Mascola JR, Misasi J, Ruckwardt T, Sullivan NJ, Shapiro L, Kwong PD
SSRN (2020) pp. 3639618-3639618 [ DOI: doi:10.2139/ssrn.3639618 Pubmed: 32742241 ]