Structure of the IFN-lambda4/IFN-lambdaR1/IL-10Rbeta receptor complex with an engineered IL-10Rbeta
Grubbe WS, Zhang B, Kauffman A, Bylehn F, Padol K, Jung HG, Park SB, Priest JM, Ozkan E, de Pablo JJ, Liang TJ, Zhao M, Mendoza JL
Nat Commun (2025) 16 pp. 818-818 [ DOI: doi:10.1038/s41467-025-56119-y Pubmed: 39827213 ]
- Structure of the ifn-lambda4/ifn-lambdar1/il-10rbeta receptor complex with an engineered il-10rbeta (71 kDa, Complex from Homo sapiens)
- Interleukin-10 receptor subunit beta (24 kDa, Protein from Homo sapiens)
- Interferon lambda-4 (19 kDa, Protein from Homo sapiens)
- Interferon lambda receptor 1 (23 kDa, Protein from Homo sapiens)
Structure of the IFN-lambda3/IFN-lambdaR1/IL-10Rbeta receptor complex with an engineered IL-10Rbeta
Grubbe WS, Zhang B, Kauffman A, Bylehn F, Padol K, Jung HG, Park SB, Priest JM, Ozkan E, de Pablo JJ, Liang TJ, Zhao M, Mendoza JL
Nat Commun (2025) 16 pp. 818-818 [ DOI: doi:10.1038/s41467-025-56119-y Pubmed: 39827213 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Interferon lambda-3 (19 kDa, Protein from Homo sapiens)
- Structure of the ifn-lambda3/ifn-lambdar1/il-10rbeta receptor complex with an engineered il-10rbeta (71 kDa, Complex from Homo sapiens)
- Interleukin-10 receptor subunit beta (24 kDa, Protein from Homo sapiens)
- Interferon lambda receptor 1 (23 kDa, Protein from Homo sapiens)
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 7yr5
Q-score: 0.382
Xu B, Zhang M, Zhang B, Chi W, Ma X, Zhang W, Dong M, Sheng L, Zhang Y, Jiao W, Shan Y, Chang W, Wang P, Wen S, Pei D, Chen L, Zhang X, Yan H, Ye S
Cell Rep (2022) 40 pp. 111343-111343 [ Pubmed: 36103816 DOI: doi:10.1016/j.celrep.2022.111343 ]
- Mct1-embigin (Complex from Homo sapiens)
- Embigin (36 kDa, Protein from Homo sapiens)
- Monocarboxylate transporter 1 (55 kDa, Protein from Homo sapiens)
Locally refined region of SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-61.1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7tbf
Q-score: 0.498
Zhou T, Wang L, Misasi J, Pegu A, Zhang Y, Harris DR, Olia AS, Talana CA, Yang ES, Chen M, Choe M, Shi W, Teng IT, Creanga A, Jenkins C, Leung K, Liu T, Stancofski ED, Stephens T, Zhang B, Tsybovsky Y, Graham BS, Mascola JR, Sullivan NJ, Kwong PD
Science (2022) 376 pp. eabn8897-eabn8897 [ Pubmed: 35324257 DOI: doi:10.1126/science.abn8897 ]
- Heavy chain of sars-cov-2 antibody b1-182.1 (24 kDa, Protein from Homo sapiens)
- Spike glycoprotein (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of sars-cov-2 antibody a19-61.1 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike in complex with antibodies b1-182.1 and a19-61.1 (570 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of sars-cov-2 antibody b1-182.1 (23 kDa, Protein from Homo sapiens)
- Heavy chain of sars-cov-2 antibody a19-61.1 (13 kDa, Protein from Homo sapiens)
Locally refined region of SARS-CoV-2 spike in complex with antibody A19-46.1
Resolution: 5.08 Å
EM Method: Single-particle
Fitted PDBs: 7tc9
Q-score: 0.221
Zhou T, Wang L, Misasi J, Pegu A, Zhang Y, Harris DR, Olia AS, Talana CA, Yang ES, Chen M, Choe M, Shi W, Teng IT, Creanga A, Jenkins C, Leung K, Liu T, Stancofski ED, Stephens T, Zhang B, Tsybovsky Y, Graham BS, Mascola JR, Sullivan NJ, Kwong PD
Science (2022) 376 pp. eabn8897-eabn8897 [ Pubmed: 35324257 DOI: doi:10.1126/science.abn8897 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike in complex with antibody a19-46.1, local refinement. (570 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of antibody a19-46.1 (24 kDa, Protein from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Homo sapiens)
- Light chain of antibody a19-46.1 (22 kDa, Protein from Homo sapiens)
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7mlz
Q-score: 0.348
Wang L, Zhou T, Zhang Y, Yang ES, Schramm CA, Shi W, Pegu A, Oloniniyi OK, Henry AR, Darko S, Narpala SR, Hatcher C, Martinez DR, Tsybovsky Y, Phung E, Abiona OM, Antia A, Cale EM, Chang LA, Choe M, Corbett KS, Davis RL, DiPiazza AT, Gordon IJ, Hait SH, Hermanus T, Kgagudi P, Laboune F, Leung K, Liu T, Mason RD, Nazzari AF, Novik L, O'Connell S, O'Dell S, Olia AS, Schmidt SD, Stephens T, Stringham CD, Talana CA, Teng IT, Wagner DA, Widge AT, Zhang B, Roederer M, Ledgerwood JE, Ruckwardt TJ, Gaudinski MR, Moore PL, Doria-Rose NA, Baric RS, Graham BS, McDermott AB, Douek DC, Kwong PD, Mascola JR, Sullivan NJ, Misasi J
Science (2021) 373 [ DOI: doi:10.1126/science.abh1766 Pubmed: 34210892 ]
- Sars-cov-2 spike rbd in complex with neutralizing antibody b1-182.1 (539 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- B1-182.1 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- B1-182.1 fab light chain (23 kDa, Protein from Homo sapiens)
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7lrs
Q-score: 0.419
Wang L, Zhou T, Zhang Y, Yang ES, Schramm CA, Shi W, Pegu A, Oloniniyi OK, Henry AR, Darko S, Narpala SR, Hatcher C, Martinez DR, Tsybovsky Y, Phung E, Abiona OM, Antia A, Cale EM, Chang LA, Choe M, Corbett KS, Davis RL, DiPiazza AT, Gordon IJ, Hait SH, Hermanus T, Kgagudi P, Laboune F, Leung K, Liu T, Mason RD, Nazzari AF, Novik L, O'Connell S, O'Dell S, Olia AS, Schmidt SD, Stephens T, Stringham CD, Talana CA, Teng IT, Wagner DA, Widge AT, Zhang B, Roederer M, Ledgerwood JE, Ruckwardt TJ, Gaudinski MR, Moore PL, Doria-Rose NA, Baric RS, Graham BS, McDermott AB, Douek DC, Kwong PD, Mascola JR, Sullivan NJ, Misasi J
Science (2021) 373 [ DOI: doi:10.1126/science.abh1766 Pubmed: 34210892 ]
- Sars-cov-2 spike in complex with neutralizing antibody a789-58.1 (539 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Antibody a23-58.1 light chain (23 kDa, Protein from Homo sapiens)
- Antibody a23-58.1 heavy chain (24 kDa, Protein from Homo sapiens)
- Spike glycoprotein (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of EcmrR-DNA complex in EcmrR-RPo
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6xl6
Q-score: 0.536
Yang Y, Liu C, Zhou W, Shi W, Chen M, Zhang B, Schatz DG, Hu Y, Liu B
Nat Commun (2021) 12 pp. 2702-2702 [ DOI: doi:10.1038/s41467-021-22990-8 Pubmed: 33976201 ]
- Ecmrr-spacer dna complex in ecmrr-rnap-promoter open complex (ecmrr-rpo) (Complex from Escherichia coli)
- Merr family transcriptional regulator ecmrr (31 kDa, Protein from Escherichia coli)
- Tetraphenylantimonium ion (430 Da, Ligand)
- Synthetic non-template strand dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Synthetic template strand dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Chapso (631 Da, Ligand)
Cryo-EM structure of EcmrR-DNA complex in EcmrR-RPitc-3nt
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6xla
Q-score: 0.546
Yang Y, Liu C, Zhou W, Shi W, Chen M, Zhang B, Schatz DG, Hu Y, Liu B
Nat Commun (2021) 12 pp. 2702-2702 [ DOI: doi:10.1038/s41467-021-22990-8 Pubmed: 33976201 ]
- Merr family transcriptional regulator ecmrr (31 kDa, Protein from Escherichia coli)
- Tetraphenylantimonium ion (430 Da, Ligand)
- Synthetic non-template strand dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Synthetic template strand dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Ecmrr-spacer dna complex in ecmrr-rnap-promoter initial transcribing complex with 3-nt rna transcript (ecmrr-rpitc-3nt) (Complex from Escherichia coli)
Cryo-EM structure of EcmrR-DNA complex in EcmrR-RPitc-4nt
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6xlk
Q-score: 0.495
Yang Y, Liu C, Zhou W, Shi W, Chen M, Zhang B, Schatz DG, Hu Y, Liu B
Nat Commun (2021) 12 pp. 2702-2702 [ DOI: doi:10.1038/s41467-021-22990-8 Pubmed: 33976201 ]
- Merr family transcriptional regulator ecmrr (31 kDa, Protein from Escherichia coli)
- Tetraphenylantimonium ion (430 Da, Ligand)
- Synthetic non-template strand dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Synthetic template strand dna (54-mer) (16 kDa, DNA from Escherichia coli)
- Ecmrr-spacer dna complex in ecmrr-rnap-promoter initial transcribing complex with 4-nt rna transcript (ecmrr-rpitc-4nt) (Complex from Escherichia coli)
- Chapso (631 Da, Ligand)