Electron Microscopy Data Bank

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Release date: May 6, 2020
Resolution: 26.1 Å
EM Method: Single-particle

Wang D, Liu X, Wei M, Qian C, Song S, Chen J, Wang Z, Xu Q, Yang Y, He M, Chi X, Huang S, Li T, Kong Z, Zheng Q, Yu H, Wang Y, Zhao Q, Zhang J, Xia N, Gu Y, Li S

Nat Commun (2020) 11 pp. 2841-2841 [ DOI: doi:10.1038/s41467-020-16639-1 Pubmed: 32503989 ]

Sample:

Human papillomavirus (Virus from Human papillomavirus)

EMD-0816

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CryoEM structure of HPV6 PsV subparticle

Release date: Dec. 25, 2019
Resolution: 4.18 Å
EM Method: Single-particle
Fitted PDBs: 6l31
Q-score: 0.288

Liu X, Chen J, Wang Z, Wang D, He M, Qian C, Song S, Chi X, Kong Z, Zheng Q, Wang Y, Yu H, Zhao Q, Zhang J, Li S, Gu Y, Xia N

Emerg Microbes Infect (2019) 8 pp. 1721-1733 [ DOI: doi:10.1080/22221751.2019.1694396 Pubmed: 31769733 ]

Sample:

Human papillomavirus type 6 (Virus from Human papillomavirus type 6)
Major capsid protein l1 (49 kDa, Protein from Human papillomavirus type 6)

EMD-0817

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CryoEM structure of HPV6 PsV

Release date: Dec. 11, 2019
Resolution: 5.5 Å
EM Method: Single-particle

Liu X, Chen J, Wang Z, Wang D, He M, Qian C, Song S, Chi X, Kong Z, Zheng Q, Wang Y, Yu H, Zhao Q, Zhang J, Li S, Gu Y, Xia N

Emerg Microbes Infect (2019) 8 pp. 1721-1733 [ DOI: doi:10.1080/22221751.2019.1694396 Pubmed: 31769733 ]

Sample:

Human papillomavirus type 6 (Virus from Human papillomavirus type 6)

EMD-0818

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Cryo-EM structure of HPV6 PsV in complex with the Fab fragment of antibody 5D3

Release date: Dec. 11, 2019
Resolution: 16.55 Å
EM Method: Single-particle

Liu X, Chen J, Wang Z, Wang D, He M, Qian C, Song S, Chi X, Kong Z, Zheng Q, Wang Y, Yu H, Zhao Q, Zhang J, Li S, Gu Y, Xia N

Emerg Microbes Infect (2019) 8 pp. 1721-1733 [ DOI: doi:10.1080/22221751.2019.1694396 Pubmed: 31769733 ]

Sample:

Hpv6 psv in complex with the fab fragment of antibody 5d3 (Complex from Human papillomavirus type 6)

EMD-0819

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Cryo-EM structure of HPV6 PsV in complex with the Fab fragment of antibody 17D5

Release date: Dec. 11, 2019
Resolution: 11.94 Å
EM Method: Single-particle

Liu X, Chen J, Wang Z, Wang D, He M, Qian C, Song S, Chi X, Kong Z, Zheng Q, Wang Y, Yu H, Zhao Q, Zhang J, Li S, Gu Y, Xia N

Emerg Microbes Infect (2019) 8 pp. 1721-1733 [ DOI: doi:10.1080/22221751.2019.1694396 Pubmed: 31769733 ]

Sample:

Hpv6 psv in complex with the fab fragment of antibody 17d5 (Complex from Human papillomavirus type 6)

EMD-0820

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Cryo-EM structure of HPV6 PsV in complex with the Fab fragment of antibody 15F7

Release date: Dec. 11, 2019
Resolution: 4.36 Å
EM Method: Single-particle

Liu X, Chen J, Wang Z, Wang D, He M, Qian C, Song S, Chi X, Kong Z, Zheng Q, Wang Y, Yu H, Zhao Q, Zhang J, Li S, Gu Y, Xia N

Emerg Microbes Infect (2019) 8 pp. 1721-1733 [ DOI: doi:10.1080/22221751.2019.1694396 Pubmed: 31769733 ]

Sample:

Hpv6 psv in complex with the fab fragment of antibody 5d3 (Complex from Human papillomavirus type 6)

EMD-9600

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The structure of CVA10 virus mature virion

Release date: Nov. 21, 2018
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acu
Q-score: 0.086

Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Zhou ZH, Cheng T, Xia N

Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ DOI: doi:10.1126/sciadv.aat7459 Pubmed: 30255146 ]

Sample:

Coxsackievirus a10 (Virus from Coxsackievirus A10)
Vp1 (33 kDa, Protein from Coxsackievirus A10)
Vp3 (26 kDa, Protein from Coxsackievirus A10)
Sphingosine (299 Da, Ligand)
Vp2 (27 kDa, Protein from Coxsackievirus A10)
Vp4 (7 kDa, Protein from Coxsackievirus A10)

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EMD-9601

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The structure of CVA10 virus procapsid particle

Release date: Nov. 21, 2018
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6acw
Q-score: 0.476

Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N

Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ DOI: doi:10.1126/sciadv.aat7459 Pubmed: 30255146 ]

Sample:

Vp0 (35 kDa, Protein from Coxsackievirus A10)
Vp1 (33 kDa, Protein from Coxsackievirus A10)
Vp3 (26 kDa, Protein from Coxsackievirus A10)
Coxsackievirus a10 (Virus from Coxsackievirus A10)

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EMD-9602

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The structure of CVA10 virus A-particle

Release date: Nov. 21, 2018
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acy
Q-score: 0.543

Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N

Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ DOI: doi:10.1126/sciadv.aat7459 Pubmed: 30255146 ]

Sample:

Vp1 (33 kDa, Protein from Coxsackievirus A10)
Vp3 (26 kDa, Protein from Coxsackievirus A10)
Vp2 (27 kDa, Protein from Coxsackievirus A10)
Coxsackievirus a10 (Virus from Coxsackievirus A10)

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EMD-9603

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The structure of CVA10 virus A-particle from its complex with Fab 2G8

Release date: Nov. 21, 2018
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6acz
Q-score: 0.466

Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N

Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ DOI: doi:10.1126/sciadv.aat7459 Pubmed: 30255146 ]

Sample:

Vp1 (33 kDa, Protein from Coxsackievirus A10)
Vp3 (26 kDa, Protein from Coxsackievirus A10)
Vp2 (27 kDa, Protein from Coxsackievirus A10)
Coxsackievirus a10 (Virus from Coxsackievirus A10)

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