Cryo-EM structure of partial VP4 from simian rotavirus SA11
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 8ygr
Q-score: 0.413
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Rotavirus a (Virus from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Partial vp4 of rotavirus (Complex from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8ygs
Q-score: 0.444
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Antibody 7h13 heavy chain (12 kDa, Protein from Mus musculus)
- Rotavirus vp4 (Complex from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Fab 7h13 (Complex from Mus musculus)
- Immune complex of rotavirus with 7h13 (Complex from Rotavirus A)
- Antibody 7h13 light chain (11 kDa, Protein from Mus musculus)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13 at Low concentration
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (left side)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8ygt
Q-score: 0.559
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Rotavirus vp4 (Complex from Rotavirus A)
- Fab 7h13 (Complex from Mus musculus)
- Antibody 7h13-i54g mutant light chain (11 kDa, Protein from Mus musculus)
- Antibody 7h13-i54g mutant heavy chain (12 kDa, Protein from Mus musculus)
- Immune complex of rotavirus with 7h13 (Complex from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (right side)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8ygu
Q-score: 0.526
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Antibody 7h13-i54g mutant light chain (11 kDa, Protein from Mus musculus)
- Outer capsid protein vp4 (87 kDa, Protein from Rotavirus A)
- Antibody 7h13-i54g mutant heavy chain (12 kDa, Protein from Mus musculus)
- Immune complex of rotavirus with 7h13-i54g mutant (Complex from Rotavirus A)
- Fab 7h13 (Complex from Rotavirus A)
- Rotavirus vp4 (Complex from Rotavirus A)
Cryo-EM structure of human HCN3 channel with cAMP
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8io0
Q-score: 0.42
Cryo-EM structure of C.crescentus bNY30a pilus complex
Resolution: 2.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 8u2b
Q-score: 0.521
Wang Y, Theodore M, Xing Z, Narsaria U, Yu Z, Zeng L, Zhang J
Sci Adv (2024) 10 pp. eadl4450-eadl4450 [ DOI: doi:10.1126/sciadv.adl4450 Pubmed: 38701202 ]
- Flp family type ivb pilin (4 kDa, Protein from Caulobacter vibrioides)
- Caulobacter crescentus pili (170 kDa, Complex from Caulobacter vibrioides)
PhiCb5 maturation protein with Caulobacter crescentus bNY30a pili
Resolution: 6.45 Å
EM Method: Single-particle
Fitted PDBs: 8ucr
Q-score: 0.158
Wang Y, Theodore M, Xing Z, Narsaria U, Yu Z, Zeng L, Zhang J
Sci Adv (2024) 10 pp. eadl4450-eadl4450 [ DOI: doi:10.1126/sciadv.adl4450 Pubmed: 38701202 ]
- A complex of pilus and phicb5 maturation protein (210 kDa, Complex from Caulobacter vibrioides)
- Flp family type ivb pilin (4 kDa, Protein from Caulobacter vibrioides)
- Maturation protein (40 kDa, Protein from Caulobacter phage phiCb5)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8uej
Q-score: 0.449
Wang Y, Theodore M, Xing Z, Narsaria U, Yu Z, Zeng L, Zhang J
Sci Adv (2024) 10 pp. eadl4450-eadl4450 [ DOI: doi:10.1126/sciadv.adl4450 Pubmed: 38701202 ]
- Coat protein (13 kDa, Protein from Caulobacter phage phiCb5)
- Calcium ion (40 Da, Ligand)
- Maturation protein (40 kDa, Protein from Caulobacter phage phiCb5)
- A complex of phicb5 maturation protein and phicb5 shell (2 MDa, Complex from Caulobacter vibrioides)
Cryo-EM structure of human HCN3 channel in apo state
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 8inz
Q-score: 0.526
Yu B, Lu Q, Li J, Cheng X, Hu H, Li Y, Che T, Hua Y, Jiang H, Zhang Y, Xian C, Yang T, Fu Y, Chen Y, Nan W, McCormick PJ, Xiong B, Duan J, Zeng B, Li Y, Fu Y, Zhang J
J Biol Chem (2024) 300 pp. 107288-107288 [ Pubmed: 38636662 DOI: doi:10.1016/j.jbc.2024.107288 ]
- Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 (86 kDa, Protein from Homo sapiens)
- 4-[[(2~{s},4~{a}~{r},6~{s},8~{a}~{s})-6-[(4~{s},5~{r})-4-[(2~{s})-butan-2-yl]-5,9-dimethyl-decyl]-4~{a}-methyl-2,3,4,5,6,7,8,8~{a}-octahydro-1~{h}-naphthalen-2-yl]oxy]-4-oxidanylidene-butanoic acid (492 Da, Ligand)
- Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 (Complex from Homo sapiens)