S protein of Delta variant in complex with ZWD12
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7wwl
Q-score: 0.444
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ DOI: doi:10.1038/s41392-022-00987-z Pubmed: 35478188 ]
- S protein of delta variant in complex with zwd12 (Complex)
- Zwd12 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of zwd12 (13 kDa, Protein from Homo sapiens)
- Light chain of zwd12 (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of delta variant (Complex from Severe acute respiratory syndrome coronavirus 2)
S protein of Delta variant in complex with ZWD12 focused on RBD_ZWD12 sub-complex
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ DOI: doi:10.1038/s41392-022-00987-z Pubmed: 35478188 ]
S protein of Delta variant in complex with ZWC6 focused on RBD_ZWC6 sub-complex
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ DOI: doi:10.1038/s41392-022-00987-z Pubmed: 35478188 ]
S protein of SARS-CoV-2 in complex with 2G1
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7x08
Q-score: 0.458
Ma H, Guo Y, Tang H, Tseng CK, Wang L, Zong H, Wang Z, He Y, Chang Y, Wang S, Huang H, Ke Y, Yuan Y, Wu M, Zhang Y, Drelich A, Kempaiah KR, Peng BH, Wang A, Yang K, Yin H, Liu J, Yue Y, Xu W, Zhu S, Ji T, Zhang X, Wang Z, Li G, Liu G, Song J, Mu L, Xiang Z, Song Z, Chen H, Bian Y, Zhang B, Chen H, Zhang J, Liao Y, Zhang L, Yang L, Chen Y, Gilly J, Xiao X, Han L, Jiang H, Xie Y, Zhou Q, Zhu J
Cell Discov (2022) 8 pp. 16-16 [ Pubmed: 35169121 DOI: doi:10.1038/s41421-022-00381-7 ]
- Heavy chain of 2g1 (49 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of 2g1 (22 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex with 2g1 (Complex)
- 2g1 (Complex from Homo sapiens)
- S protein of sars-cov-2 (Complex from Severe acute respiratory syndrome coronavirus)
- Linoleic acid (280 Da, Ligand)
S protein of SARS-CoV-2 in complex with 2G1 focused on RBD_2G1 sub-complex
Ma H, Guo Y, Tang H, Tseng CK, Wang L, Zong H, Wang Z, He Y, Chang Y, Wang S, Huang H, Ke Y, Yuan Y, Wu M, Zhang Y, Drelich A, Kempaiah KR, Peng BH, Wang A, Yang K, Yin H, Liu J, Yue Y, Xu W, Zhu S, Ji T, Zhang X, Wang Z, Li G, Liu G, Song J, Mu L, Xiang Z, Song Z, Chen H, Bian Y, Zhang B, Chen H, Zhang J, Liao Y, Zhang L, Yang L, Chen Y, Gilly J, Xiao X, Han L, Jiang H, Xie Y, Zhou Q, Zhu J
Cell Discov (2022) 8 pp. 16-16 [ Pubmed: 35169121 DOI: doi:10.1038/s41421-022-00381-7 ]
Cryo-EM structure of the Ams1 and Nbr1 complex
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7dd9
Q-score: 0.668
Wang YY, Zhang J, Liu XM, Li Y, Sui J, Dong MQ, Ye K, Du LL
EMBO J (2021) 40 pp. e107497-e107497 [ DOI: doi:10.15252/embj.2020107497 Pubmed: 34169534 ]
- Alpha-mannosidase,zz-type zinc finger-containing protein p35g2.11c,maltose/maltodextrin-binding periplasmic protein (178 kDa, Protein from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- Ams1 and nbr1 fusion protein (520 kDa, Complex from Schizosaccharomyces pombe 972h-)
- Water (18 Da, Ligand)
Cryo-EM structure of the Ape4 and Nbr1 complex
Resolution: 2.26 Å
EM Method: Single-particle
Fitted PDBs: 7dde
Q-score: 0.545
Wang YY, Zhang J, Liu XM, Li Y, Sui J, Dong MQ, Ye K, Du LL
EMBO J (2021) 40 pp. e107497-e107497 [ DOI: doi:10.15252/embj.2020107497 Pubmed: 34169534 ]
- Water (18 Da, Ligand)
- Ape4 and nbr1 fusion protein (750 kDa, Complex from Schizosaccharomyces pombe 972h-)
- Zinc ion (65 Da, Ligand)
- Aspartyl aminopeptidase 1,zz-type zinc finger-containing protein p35g2.11c,maltose/maltodextrin-binding periplasmic protein (102 kDa, Protein from Escherichia coli (strain K12))
Structure of S.pombe alpha-mannosidase Ams1
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6lz1
Q-score: 0.556
FEBS Open Bio (2020) 10 pp. 2437-2451 [ DOI: doi:10.1002/2211-5463.12988 Pubmed: 32981237 ]
- Zinc ion (65 Da, Ligand)
- Ams1 (129 kDa, Protein from Schizosaccharomyces pombe 972h-)
- Ams1 tetramer (480 kDa, Complex from Schizosaccharomyces pombe)
cryo EM map of the S protein of SARS-CoV-2 in complex bound with 4A8
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7c2l
Q-score: 0.362
Chi X, Yan R, Zhang J, Zhang G, Zhang Y, Hao M, Zhang Z, Fan P, Dong Y, Yang Y, Chen Z, Guo Y, Zhang J, Li Y, Song X, Chen Y, Xia L, Fu L, Hou L, Xu J, Yu C, Li J, Zhou Q, Chen W
Science (2020) 369 pp. 650-655 [ DOI: doi:10.1126/science.abc6952 Pubmed: 32571838 ]
- Light chain of 4a8 (24 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with 4a8 (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of 4a8 (50 kDa, Protein from Homo sapiens)
Cryo EM map of the interface between NTD of SARS-CoV-2 and 4A8