Cryo-EM structure of Long-wave-sensitive opsin 1
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8iu2
Q-score: 0.482
To Be Published
- Long-wave-sensitive opsin 1 (40 kDa, Protein from Homo sapiens)
- Long-wave-sensitive opsin 1 (Complex from Homo sapiens)
- Scfv recombinant human monoclonal antibody (scfv16) (27 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Retinal (284 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
Closed state of SARS-CoV-2 BA.2 variant spike protein
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8d55
Q-score: 0.434
One RBD-up state of SARS-CoV-2 BA.2 variant spike protein
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8d56
Q-score: 0.438
Middle state of SARS-CoV-2 BA.2 variant spike protein
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8d5a
Q-score: 0.414
Cryo-EM structure of SARS-CoV-2 postfusion spike in membrane
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8fdw
Q-score: 0.327
Shi W, Cai Y, Zhu H, Peng H, Voyer J, Rits-Volloch S, Cao H, Mayer ML, Song K, Xu C, Lu J, Zhang J, Chen B
Nature (2023) 619 pp. 403-409 [ DOI: doi:10.1038/s41586-023-06273-4 Pubmed: 37285872 ]
- Sras-cov-2 postfusion spike protein in nanodisc (210 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Spike protein s2 (68 kDa, Protein from Severe acute respiratory syndrome coronavirus)
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 7ujj
Q-score: 0.041
Zeng Y, Jiang M, Robinson S, Peng Z, Chonira V, Simeon R, Tzipori S, Zhang J, Chen Z
Bioengineering (Basel) (2022) 9 [ DOI: doi:10.3390/bioengineering9100511 Pubmed: 36290479 ]
- 3-pyridinium-1-ylpropane-1-sulfonate (201 Da, Ligand)
- 1,2-ethanediol (62 Da, Ligand)
- Darpin (Complex)
- Shiga-like toxin 2 subunit a (33 kDa, Protein from Escherichia phage 933W)
- Shiga-like toxin 2 subunit b (Complex)
- Darpin (19 kDa, Protein from Synthetic construct)
- Shiga-like toxin 2 subunit a (Complex)
- Sodium ion (22 Da, Ligand)
- Shiga-like toxin 2 subunit b (7 kDa, Protein from Escherichia phage 933W)
- Ternary complex of stx2 and darpin (Complex from Escherichia phage 933W)
- Formic acid (46 Da, Ligand)
- Water (18 Da, Ligand)
17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gjm
Q-score: 0.406
Kwon HJ, Zhang J, Kosikova M, Tang W, Ortega-Rodriguez U, Peng H, Meseda CA, Pedro CL, Schmeisser F, Lu J, Kang I, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Barnes RS, Pasetti MF, Weir JP, Chen B, Xie H
J Med Virol (2023) 95 pp. e28673-e28673 [ Pubmed: 36916782 DOI: doi:10.1002/jmv.28673 ]
- Heavy chain of 17b10 fab (15 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (144 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of 17b10 fab (14 kDa, Protein from Mus musculus)
- 17b10 fab in complex of full-length sars-cov-2 spike g614 trimer (700 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of human Alpha-fetoprotein
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7yim
Q-score: 0.484
Zheng L, Liu N, Gao X, Zhu W, Liu K, Wu C, Yan R, Zhang J, Gao X, Yao Y, Deng B, Xu J, Lu Y, Liu Z, Li M, Wei X, Wang HW, Peng H
Nat Methods (2023) 20 pp. 123-130 [ DOI: doi:10.1038/s41592-022-01693-y Pubmed: 36522503 ]
- Alpha-fetoprotein (68 kDa, Protein from Homo sapiens)
- Alpha-fetoprotein with no symmetry (67 kDa, Complex from Homo sapiens)
cryo-EM structure of hemoglobin
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7xgy
Q-score: 0.407
Zheng L, Liu N, Gao X, Zhu W, Liu K, Wu C, Yan R, Zhang J, Gao X, Yao Y, Deng B, Xu J, Lu Y, Liu Z, Li M, Wei X, Wang HW, Peng H
Nat Methods (2023) 20 pp. 123-130 [ DOI: doi:10.1038/s41592-022-01693-y Pubmed: 36522503 ]
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Hemoglobin (Complex from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7upw
Q-score: 0.464
Luo S, Zhang J, Kreutzberger AJB, Eaton A, Edwards RJ, Jing C, Dai HQ, Sempowski GD, Cronin K, Parks R, Ye AY, Mansouri K, Barr M, Pishesha N, Williams AC, Vieira Francisco L, Saminathan A, Peng H, Batra H, Bellusci L, Khurana S, Alam SM, Montefiori DC, Saunders KO, Tian M, Ploegh H, Kirchhausen T, Chen B, Haynes BF, Alt FW
Sci Immunol (2022) 7 pp. eadd5446-eadd5446 [ Pubmed: 35951767 DOI: doi:10.1126/sciimmunol.add5446 ]
- Sp1-77 fab heavy chain (49 kDa, Protein from Homo sapiens)
- Spike glycoprotein (144 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sp1-77 fab light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus)
- Sp1-77 fab heavy chain, sp1-77 fab light chain (Complex from Homo sapiens)
- Three rbd-down state of sars-cov-2 d614g spike in complex with the sp1-77 neutralizing antibody fab fragment (650 kDa, Complex)