Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 8gtf
Q-score: 0.16
Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N
Nat Commun (2023) 14 pp. 3609-3609 [ DOI: doi:10.1038/s41467-023-39220-y Pubmed: 37330604 ]
- Dinoroseobacter phage vb_dshs-r4c (Virus from Dinoroseobacter phage vB DshS-R4C)
- Terminator protein (14 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Head-to-tail joining protein (10 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Major tail protein (13 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
Conformational Dynamics of the D53-D3-D14 Complex in Strigolactone Signaling
Resolution: 7.09 Å
EM Method: Single-particle
Fitted PDBs: 8if6
Q-score: 0.121
Liu S, Wang J, Song B, Gong X, Liu H, Hu Q, Zhang J, Li Q, Zheng J, Wang H, Xu HE, Li J, Wang B
Plant Cell Physiol (2023) 64 pp. 1046-1056 [ DOI: doi:10.1093/pcp/pcad067 Pubmed: 37384578 ]
- Strigolactone esterase d14 (33 kDa, Protein from Oryza sativa subsp. japonica)
- F-box/lrr-repeat max2 homolog (79 kDa, Protein from Oryza sativa subsp. japonica)
- Plant protein complex (Complex from Oryza sativa)
- Skp1-like protein 20 (19 kDa, Protein from Oryza sativa subsp. japonica)
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 7ujj
Q-score: 0.041
Zeng Y, Jiang M, Robinson S, Peng Z, Chonira V, Simeon R, Tzipori S, Zhang J, Chen Z
Bioengineering (Basel) (2022) 9 [ DOI: doi:10.3390/bioengineering9100511 Pubmed: 36290479 ]
- Shiga-like toxin 2 subunit b (7 kDa, Protein from Escherichia phage 933W)
- Shiga-like toxin 2 subunit a (33 kDa, Protein from Escherichia phage 933W)
- Water (18 Da, Ligand)
- Darpin (Complex)
- 3-pyridinium-1-ylpropane-1-sulfonate (201 Da, Ligand)
- Formic acid (46 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Shiga-like toxin 2 subunit b (Complex)
- 1,2-ethanediol (62 Da, Ligand)
- Ternary complex of stx2 and darpin (Complex from Escherichia phage 933W)
- Shiga-like toxin 2 subunit a (Complex)
- Darpin (19 kDa, Protein from Synthetic construct)
Structure of GluN1a E698C-GluN2D NMDA receptor in cystines crosslinked state.
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 7yfo
Q-score: 0.234
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Glutamate receptor ionotropic, nmda 2d (97 kDa, Protein from Homo sapiens)
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Homo sapiens)
- Nmda receptor with nmda 1 incorperated with nmda 2d (384 MDa, Complex from Homo sapiens)
Resolution: 6.41 Å
EM Method: Single-particle
Fitted PDBs: 7dnk
Q-score: 0.184
He M, Chi X, Zha Z, Li Y, Chen J, Huang Y, Huang S, Yu M, Wang Z, Song S, Liu X, Wei S, Li Z, Li T, Wang Y, Yu H, Zhao Q, Zhang J, Zheng Q, Gu Y, Li S, Xia N
J Virol (2021) 95 [ Pubmed: 33472937 DOI: doi:10.1128/JVI.01587-20 ]
- The light chain of 5g9 fab fragment (23 kDa, Protein from Mus musculus)
- Major capsid protein l1 (59 kDa, Protein from Human papillomavirus type 58)
- The heavy chain of 5g9 fab fragment (22 kDa, Protein from Mus musculus)
- Human papillomavirus type 58 pseudpvirus (Complex)
- 2-fold sub-articles refinement of human papillomavirus type 58 pseudpvirus in complexed with the fab fragment of 5g9 (Complex from Mus musculus)
- Fab fragment of 5g9 (Complex from Human papillomavirus type 58)
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 6irh
Q-score: 0.171
Cryo-EM structure of Human Papillomavirus Type 59 L1 Virus-like Particle
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 5jb1
Q-score: 0.255
Li Z, Yan X, Yu H, Wang D, Song S, Li Y, He M, Hong Q, Zheng Q, Zhao Q, Gu Y, Zhang J, Janssen ME, Cardone G, Olson NH, Baker TS, Li S, Xia N
Structure (2016) 24 pp. 874-885 [ Pubmed: 27276427 DOI: doi:10.1016/j.str.2016.04.008 ]
- Human papillomavirus type 59 (19 MDa, Virus from Human papillomavirus type 59)
- Major capsid protein l1 (55 kDa, Protein from Human papillomavirus type 59)
Resolution: 6.7 Å
EM Method: Single-particle
Fitted PDBs: 3izi
Q-score: 0.127
Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J
Cell (2011) 144 pp. 240-252 [ Pubmed: 21241893 DOI: doi:10.1016/j.cell.2010.12.017 ]
- Chaperonin (900 kDa, Protein from Methanococcus maripaludis)
- Mm-cpn rls with atp (900 kDa, Sample)
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 3izj
Q-score: 0.117
Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J
Cell (2011) 144 pp. 240-252 [ Pubmed: 21241893 DOI: doi:10.1016/j.cell.2010.12.017 ]
- Chaperonin (900 kDa, Protein from Methanococcus maripaludis)
- Mm-cpn rls with atp and alfx (900 kDa, Sample)
Mm-cpn rls deltalid with ATP and AlFx
Resolution: 6.2 Å
EM Method: Single-particle
Fitted PDBs: 3izl
Q-score: 0.128
Douglas NR, Reissmann S, Zhang J, Chen B, Jakana J, Kumar R, Chiu W, Frydman J
Cell (2011) 144 pp. 240-252 [ Pubmed: 21241893 DOI: doi:10.1016/j.cell.2010.12.017 ]
- Mm-cpn rls deltalid with atp and alfx (900 kDa, Sample)
- Chaperonin (900 kDa, Protein from Methanococcus maripaludis)