Cryo EM structure of lysosomal ATPase
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7fjp
Q-score: 0.527
Chen X, Zhou M, Zhang S, Yin J, Zhang P, Xuan X, Wang P, Liu Z, Zhou B, Yang M
Cell Discov (2021) 7 pp. 106-106 [ Pubmed: 34728622 DOI: doi:10.1038/s41421-021-00334-6 ]
- Phosphate ion (94 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Lysosomal atpase e1p_adp (Cellular component from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Polyamine-transporting atpase 13a2 (125 kDa, Protein from Homo sapiens)
Cryo EM structure of lysosomal ATPase
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7fjq
Q-score: 0.399
Chen X, Zhou M, Zhang S, Yin J, Zhang P, Xuan X, Wang P, Liu Z, Zhou B, Yang M
Cell Discov (2021) 7 pp. 106-106 [ Pubmed: 34728622 DOI: doi:10.1038/s41421-021-00334-6 ]
- Polyamine-transporting atpase 13a2 (125 kDa, Protein from Homo sapiens)
- Lysosomal atpase e2pi state (Cellular component from Homo sapiens)
- Spermine (202 Da, Ligand)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (3U)
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7whb
Q-score: 0.479
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ Pubmed: 37542391 DOI: doi:10.1080/22221751.2023.2245921 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Fab (Complex)
- Spike (Complex from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab-spike (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (2u1d)
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 7whd
Q-score: 0.128
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ Pubmed: 37542391 DOI: doi:10.1080/22221751.2023.2245921 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Fab (Complex)
- Spike (Complex from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab-spike (Complex from Severe acute respiratory syndrome coronavirus 2)
S protein of SARS-CoV-2 in complex bound with P2B-1A1
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7czp
Q-score: 0.359
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ig c181_light_iglv2-14_iglj3,igl@ protein (22 kDa, Protein from Homo sapiens)
- Immunoglobulin heavy variable 4-59,chain h of p2b-1a1,anti-rhd monoclonal t125 gamma1 heavy chain (49 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with p2b-1a1 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
cryo EM map of the S protein of SARS-CoV-2 in complex bound with P2B-1A10
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7czq
Q-score: 0.385
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ig c642_heavy_ighv3-53_ighd1-26_ighj6,chain h of p2b-1a10,immunoglobulin gamma-1 heavy chain (49 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with p2b-1a10 (Complex from Homo sapiens)
- Immunoglobulin kappa variable 1-33,uncharacterized protein (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
S protein of SARS-CoV-2 in complex bound with P5A-1B8_2B
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7czr
Q-score: 0.303
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of sars-cov-2 in complex bound with p5a-1b8_2b (Complex from Homo sapiens)
- Igl c4203_light_igkv1-9_igkj4,igl c4203_light_igkv1-9_igkj4,uncharacterized protein (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ig c542_heavy_ighv3-53_ighd3-10_ighj6,igh@ protein (48 kDa, Protein from Homo sapiens)
S protein of SARS-CoV-2 in complex bound with P5A-1B8_3B
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7czs
Q-score: 0.261
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- S protein of sars-cov-2 in complex bound with p5a-1b8_3b (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Igl c4203_light_igkv1-9_igkj4,uncharacterized protein (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ig c542_heavy_ighv3-53_ighd3-10_ighj6,igh@ protein (48 kDa, Protein from Homo sapiens)
S protein of SARS-CoV-2 in complex bound with P5A-2G9
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7czt
Q-score: 0.44
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of sars-cov-2 in complex bound with p2b-2g9 (Complex from Homo sapiens)
- Immunoglobulin heavy variable 3-33,chainh of p5a-2g9,immunoglobulin gamma-1 heavy chain (49 kDa, Protein from Homo sapiens)
- Ig c689_light_iglv5-37_iglj3,igl@ protein (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
S protein of SARS-CoV-2 in complex bound with P5A-1B6_2B
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7czu
Q-score: 0.324
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Immunoglobulin heavy variable 3-30-3,immunoglobulin heavy variable 3-30-3,chain h of p5a-1b6_2b,immunoglobulin gamma-1 heavy chain,immunoglobulin gamma-1 heavy chain (49 kDa, Protein from Homo sapiens)
- Immunoglobulin kappa variable 1-33,immunoglobulin kappa variable 1-33,uncharacterized protein (23 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with p5a-1b6_2b (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)