Cryo-EM structure of mink variant Y453F trimeric spike protein bound to two mink ACE2 receptors
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8t20
Q-score: 0.191
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme (89 kDa, Protein from Neovison vison)
- Cryo-em structure of mink variant y453f trimeric spike protein bound to two mink ace2 receptors (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.83 Å
EM Method: Single-particle
Fitted PDBs: 8t22
Q-score: 0.258
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of mink variant y453f trimeric spike protein bound to one mink ace2 receptors at downrbd conformation (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme (89 kDa, Protein from Neovison vison)
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 8t23
Q-score: 0.168
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
- Mink variant spike rbd-ace2 interface after local refinement (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme (89 kDa, Protein from Neovison vison)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (23 kDa, Protein from Homo sapiens)
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8t25
Q-score: 0.355
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 8taz
Q-score: 0.3
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme (89 kDa, Protein from Neogale vison)
- Cryo-em structure of mink variant y453f trimeric spike protein bound to two mink ace2 receptors (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 BA.2 spike RBD in complex bound with VacBB-551
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8gs9
Q-score: 0.495
Ju B, Fan Q, Liu C, Shen S, Wang M, Guo H, Zhou B, Ge X, Zhang Z
Cell Rep (2023) 42 pp. 112532-112532 [ DOI: doi:10.1016/j.celrep.2023.112532 Pubmed: 37219999 ]
- Light chain of vacbb-551 (10 kDa, Protein from Homo sapiens)
- Vacbb-551 (Complex)
- Sars-cov-2 spike rbd (Complex from Homo sapiens)
- Spike glycoprotein (20 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Complex of sars-cov-2 spike rbd and vacbb-551 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of vacbb-551 (12 kDa, Protein from Homo sapiens)
17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gjm
Q-score: 0.406
Kwon HJ, Zhang J, Kosikova M, Tang W, Ortega-Rodriguez U, Peng H, Meseda CA, Pedro CL, Schmeisser F, Lu J, Kang I, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Barnes RS, Pasetti MF, Weir JP, Chen B, Xie H
J Med Virol (2023) 95 pp. e28673-e28673 [ DOI: doi:10.1002/jmv.28673 Pubmed: 36916782 ]
- Light chain of 17b10 fab (14 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (144 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 17b10 fab in complex of full-length sars-cov-2 spike g614 trimer (700 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of 17b10 fab (15 kDa, Protein from Mus musculus)
17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8gjn
Q-score: 0.308
Kwon HJ, Zhang J, Kosikova M, Tang W, Ortega-Rodriguez U, Peng H, Meseda CA, Pedro CL, Schmeisser F, Lu J, Kang I, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Barnes RS, Pasetti MF, Weir JP, Chen B, Xie H
J Med Virol (2023) 95 pp. e28673-e28673 [ DOI: doi:10.1002/jmv.28673 Pubmed: 36916782 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of 17b10 fab (15 kDa, Protein from Mus musculus)
- 17b10 fab in complex with up-rbd of sars-cov-2 spike g614 trimer (100 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s2' (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of 17b10 fab (14 kDa, Protein from Mus musculus)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (focused refinement on Fab-RBD)
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 7wh8
Q-score: 0.523
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ DOI: doi:10.1080/22221751.2023.2245921 Pubmed: 37542391 ]
- Fab-spike (Complex from Homo sapiens)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Spike (Complex)
- Spike glycoprotein (31 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (3U)
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7whb
Q-score: 0.479
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ DOI: doi:10.1080/22221751.2023.2245921 Pubmed: 37542391 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab (Complex)
- Spike (Complex from Homo sapiens)
- Fab-spike (Complex from Severe acute respiratory syndrome coronavirus 2)