SARS-CoV-2 BA.2 spike RBD in complex bound with VacBB-551
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8gs9
Q-score: 0.495
Ju B, Fan Q, Liu C, Shen S, Wang M, Guo H, Zhou B, Ge X, Zhang Z
Cell Rep (2023) 42 pp. 112532-112532 [ DOI: doi:10.1016/j.celrep.2023.112532 Pubmed: 37219999 ]
- Heavy chain of vacbb-551 (12 kDa, Protein from Homo sapiens)
- Spike glycoprotein (20 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of vacbb-551 (10 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 spike rbd and vacbb-551 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike rbd (Complex from Homo sapiens)
- Vacbb-551 (Complex)
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7wp0
Q-score: 0.48
Ju B, Zheng Q, Guo H, Fan Q, Li T, Song S, Sun H, Shen S, Zhou X, Xue W, Cui L, Zhou B, Li S, Xia N, Zhang Z
Cell Res (2022) 32 pp. 491-494 [ DOI: doi:10.1038/s41422-022-00638-6 Pubmed: 35260792 ]
- Vacw-209 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 delta s6p trimer in complex with neutralizing antibody vacw-209 (Complex from Homo sapiens)
- Sars-cov-2 delta (Complex)
- Vacw-209 heavy chain (14 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ig c335_light_iglv1-40_iglj3 (11 kDa, Protein from Homo sapiens)
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 7wp2
Q-score: 0.498
Ju B, Zheng Q, Guo H, Fan Q, Li T, Song S, Sun H, Shen S, Zhou X, Xue W, Cui L, Zhou B, Li S, Xia N, Zhang Z
Cell Res (2022) 32 pp. 491-494 [ DOI: doi:10.1038/s41422-022-00638-6 Pubmed: 35260792 ]
- Vacw-209 heavy chain (14 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Vacw-209 light chain (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 c.1.2 s6p trimer in complex with neutralizing antibody vacw-209 (Complex from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7won
Q-score: 0.464
Ju B, Zheng Q, Guo H, Fan Q, Li T, Song S, Sun H, Shen S, Zhou X, Xue W, Cui L, Zhou B, Li S, Xia N, Zhang Z
Cell Res (2022) 32 pp. 491-494 [ DOI: doi:10.1038/s41422-022-00638-6 Pubmed: 35260792 ]
- Vacw-209 light chain (11 kDa, Protein from Homo sapiens)
- Neutralizing antibody vacw-209 (Complex)
- Sars-cov-2 s2p (Complex from Homo sapiens)
- Vacw-209 heavy chain (14 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 s2p trimer in complex with neutralizing antibody vacw-209 (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.77 Å
EM Method: Single-particle
Fitted PDBs: 7wp1
Q-score: 0.463
Ju B, Zheng Q, Guo H, Fan Q, Li T, Song S, Sun H, Shen S, Zhou X, Xue W, Cui L, Zhou B, Li S, Xia N, Zhang Z
Cell Res (2022) 32 pp. 491-494 [ DOI: doi:10.1038/s41422-022-00638-6 Pubmed: 35260792 ]
- Sars-cov-2 mu s6p trimer in complex with neutralizing antibody vacw-209 (Complex from Homo sapiens)
- Antibody vacw-209 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Vacw-209 light chain (11 kDa, Protein from Homo sapiens)
- Vacw-209 heavy chain (14 kDa, Protein from Homo sapiens)
- Sars-cov-2 mu (Complex)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7wp5
Q-score: 0.445
Ju B, Zheng Q, Guo H, Fan Q, Li T, Song S, Sun H, Shen S, Zhou X, Xue W, Cui L, Zhou B, Li S, Xia N, Zhang Z
Cell Res (2022) 32 pp. 491-494 [ DOI: doi:10.1038/s41422-022-00638-6 Pubmed: 35260792 ]
- Sars-cov-2 omicron s6p trimer in complex with neutralizing antibody vacw-209 (Complex from Homo sapiens)
- Vacw-209 heavy chain (14 kDa, Protein from Homo sapiens)
- Spikeprotein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Vacw-209 light chain (11 kDa, Protein from Homo sapiens)
S-ECD (Omicron) in complex with STS165
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7xic
Q-score: 0.271
Li Y, Fan Q, Zhou B, Shen Y, Zhang Y, Cheng L, Qi F, Song S, Guo Y, Yan R, Ju B, Zhang Z
iScience (2022) 25 pp. 104431-104431 [ DOI: doi:10.1016/j.isci.2022.104431 Pubmed: 35607524 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sts165 (Complex)
- S-ecd (omicron) in complex with sts165 (Complex from Severe acute respiratory syndrome coronavirus 2)
- S-ecd (omicron) (Complex from Homo sapiens)
- Light chain of sts165 (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of sts165 (13 kDa, Protein from Homo sapiens)
S-ECD (Omicron) in complex with PD of ACE2
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7xid
Q-score: 0.234
Li Y, Fan Q, Zhou B, Shen Y, Zhang Y, Cheng L, Qi F, Song S, Guo Y, Yan R, Ju B, Zhang Z
iScience (2022) 25 pp. 104431-104431 [ DOI: doi:10.1016/j.isci.2022.104431 Pubmed: 35607524 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (93 kDa, Protein from Homo sapiens)
- Ace2 (Complex)
- S-ecd (omicron) (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S-ecd (omicron) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
S protein of SARS-CoV-2 in complex bound with FabP5A-1B8
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7d00
Q-score: 0.36
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Igl c4203_light_igkv1-9_igkj4,uncharacterized protein (23 kDa, Protein from Homo sapiens)
- Ig c642_heavy_ighv3-53_ighd1-26_ighj6,chain h of fabp5a-1b8,igh@ protein (48 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with fabp5a-1b8 (Complex from Homo sapiens)
S protein of SARS-CoV-2 in complex bound with P5A-3C12_1B
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7d0b
Q-score: 0.31
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- Heavy chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- P5a-3c12_1b (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S protein of sars-cov-2 in complex bound with p5a-3c12_1b (Complex)