Cryo-EM structure of mink variant Y453F trimeric spike protein bound to two mink ACE2 receptors
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8t20
Q-score: 0.191
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme (89 kDa, Protein from Neovison vison)
- Cryo-em structure of mink variant y453f trimeric spike protein bound to two mink ace2 receptors (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.83 Å
EM Method: Single-particle
Fitted PDBs: 8t22
Q-score: 0.258
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of mink variant y453f trimeric spike protein bound to one mink ace2 receptors at downrbd conformation (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme (89 kDa, Protein from Neovison vison)
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 8t23
Q-score: 0.168
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
- Mink variant spike rbd-ace2 interface after local refinement (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (23 kDa, Protein from Homo sapiens)
- Angiotensin-converting enzyme (89 kDa, Protein from Neovison vison)
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8t25
Q-score: 0.355
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 8taz
Q-score: 0.3
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
- Angiotensin-converting enzyme (89 kDa, Protein from Neogale vison)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of mink variant y453f trimeric spike protein bound to two mink ace2 receptors (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (focused refinement on Fab-RBD)
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 7wh8
Q-score: 0.523
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ Pubmed: 37542391 DOI: doi:10.1080/22221751.2023.2245921 ]
- Spike (Complex)
- Spike glycoprotein (31 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Fab-spike (Complex from Homo sapiens)
- Fab (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (3U)
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7whb
Q-score: 0.479
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ Pubmed: 37542391 DOI: doi:10.1080/22221751.2023.2245921 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Fab (Complex)
- Spike (Complex from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab-spike (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (2u1d)
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 7whd
Q-score: 0.128
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ Pubmed: 37542391 DOI: doi:10.1080/22221751.2023.2245921 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Fab (Complex)
- Spike (Complex from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab-spike (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7wp0
Q-score: 0.48
Ju B, Zheng Q, Guo H, Fan Q, Li T, Song S, Sun H, Shen S, Zhou X, Xue W, Cui L, Zhou B, Li S, Xia N, Zhang Z
Cell Res (2022) 32 pp. 491-494 [ DOI: doi:10.1038/s41422-022-00638-6 Pubmed: 35260792 ]
- Vacw-209 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 delta s6p trimer in complex with neutralizing antibody vacw-209 (Complex from Homo sapiens)
- Sars-cov-2 delta (Complex)
- Vacw-209 heavy chain (14 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ig c335_light_iglv1-40_iglj3 (11 kDa, Protein from Homo sapiens)
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 7wp2
Q-score: 0.498
Ju B, Zheng Q, Guo H, Fan Q, Li T, Song S, Sun H, Shen S, Zhou X, Xue W, Cui L, Zhou B, Li S, Xia N, Zhang Z
Cell Res (2022) 32 pp. 491-494 [ DOI: doi:10.1038/s41422-022-00638-6 Pubmed: 35260792 ]
- Vacw-209 heavy chain (14 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Vacw-209 light chain (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 c.1.2 s6p trimer in complex with neutralizing antibody vacw-209 (Complex from Homo sapiens)