Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 8t23
Q-score: 0.168
Ahn H, Calderon BM, Fan X, Gao Y, Horgan NL, Jiang N, Blohm DS, Hossain J, Rayyan NWK, Osman SH, Lin X, Currier M, Steel J, Wentworth DE, Zhou B, Liang B
J Med Virol (2023) 95 pp. e29163-e29163 [ Pubmed: 37842796 DOI: doi:10.1002/jmv.29163 ]
- Mink variant spike rbd-ace2 interface after local refinement (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (23 kDa, Protein from Homo sapiens)
- Angiotensin-converting enzyme (89 kDa, Protein from Neovison vison)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (3U)
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7whb
Q-score: 0.479
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ Pubmed: 37542391 DOI: doi:10.1080/22221751.2023.2245921 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Fab (Complex)
- Spike (Complex from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab-spike (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (2u1d)
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 7whd
Q-score: 0.128
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ Pubmed: 37542391 DOI: doi:10.1080/22221751.2023.2245921 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Fab (Complex)
- Spike (Complex from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab-spike (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7wp0
Q-score: 0.48
Ju B, Zheng Q, Guo H, Fan Q, Li T, Song S, Sun H, Shen S, Zhou X, Xue W, Cui L, Zhou B, Li S, Xia N, Zhang Z
Cell Res (2022) 32 pp. 491-494 [ DOI: doi:10.1038/s41422-022-00638-6 Pubmed: 35260792 ]
- Vacw-209 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 delta s6p trimer in complex with neutralizing antibody vacw-209 (Complex from Homo sapiens)
- Sars-cov-2 delta (Complex)
- Vacw-209 heavy chain (14 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ig c335_light_iglv1-40_iglj3 (11 kDa, Protein from Homo sapiens)
S protein of SARS-CoV-2 in complex bound with FabP5A-1B8
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7d00
Q-score: 0.36
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Igl c4203_light_igkv1-9_igkj4,uncharacterized protein (23 kDa, Protein from Homo sapiens)
- Ig c642_heavy_ighv3-53_ighd1-26_ighj6,chain h of fabp5a-1b8,igh@ protein (48 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with fabp5a-1b8 (Complex from Homo sapiens)
S protein of SARS-CoV-2 in complex bound with P5A-3C12_1B
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7d0b
Q-score: 0.31
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- Heavy chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- P5a-3c12_1b (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S protein of sars-cov-2 in complex bound with p5a-3c12_1b (Complex)
S protein of SARS-CoV-2 in complex bound with P5A-3A1
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7d0c
Q-score: 0.328
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of sars-cov-2 in complex bound with p5a-3a1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of p5a-3a1 (23 kDa, Protein from Homo sapiens)
- P5a-3a1 (Complex)
- Light chain of p5a-3a1 (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S protein of sars-cov-2 (Complex from Homo sapiens)
S protein of SARS-CoV-2 in complex bound with P5A-3C12_2B
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7d0d
Q-score: 0.333
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- Heavy chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with p5a-3c12_2b (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- P5a-3c12 (Complex from Homo sapiens)