S-ECD (Omicron) in complex with STS165
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7xic
Q-score: 0.271
Li Y, Fan Q, Zhou B, Shen Y, Zhang Y, Cheng L, Qi F, Song S, Guo Y, Yan R, Ju B, Zhang Z
iScience (2022) 25 pp. 104431-104431 [ DOI: doi:10.1016/j.isci.2022.104431 Pubmed: 35607524 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sts165 (Complex)
- S-ecd (omicron) in complex with sts165 (Complex from Severe acute respiratory syndrome coronavirus 2)
- S-ecd (omicron) (Complex from Homo sapiens)
- Light chain of sts165 (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of sts165 (13 kDa, Protein from Homo sapiens)
S-ECD (Omicron) in complex with PD of ACE2
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7xid
Q-score: 0.234
Li Y, Fan Q, Zhou B, Shen Y, Zhang Y, Cheng L, Qi F, Song S, Guo Y, Yan R, Ju B, Zhang Z
iScience (2022) 25 pp. 104431-104431 [ DOI: doi:10.1016/j.isci.2022.104431 Pubmed: 35607524 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (93 kDa, Protein from Homo sapiens)
- Ace2 (Complex)
- S-ecd (omicron) (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S-ecd (omicron) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
S protein of SARS-CoV-2 in complex bound with FabP5A-1B8
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7d00
Q-score: 0.36
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Igl c4203_light_igkv1-9_igkj4,uncharacterized protein (23 kDa, Protein from Homo sapiens)
- Ig c642_heavy_ighv3-53_ighd1-26_ighj6,chain h of fabp5a-1b8,igh@ protein (48 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with fabp5a-1b8 (Complex from Homo sapiens)
S protein of SARS-CoV-2 in complex bound with P5A-3C12_1B
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7d0b
Q-score: 0.31
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- Heavy chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- P5a-3c12_1b (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S protein of sars-cov-2 in complex bound with p5a-3c12_1b (Complex)
S protein of SARS-CoV-2 in complex bound with P5A-3A1
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7d0c
Q-score: 0.328
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of sars-cov-2 in complex bound with p5a-3a1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of p5a-3a1 (23 kDa, Protein from Homo sapiens)
- P5a-3a1 (Complex)
- Light chain of p5a-3a1 (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S protein of sars-cov-2 (Complex from Homo sapiens)
S protein of SARS-CoV-2 in complex bound with P5A-3C12_2B
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7d0d
Q-score: 0.333
Yan R, Wang R, Ju B, Yu J, Zhang Y, Liu N, Wang J, Zhang Q, Chen P, Zhou B, Li Y, Shen Y, Zhang S, Tian L, Guo Y, Xia L, Zhong X, Cheng L, Ge X, Zhao J, Wang HW, Wang X, Zhang Z, Zhang L, Zhou Q
Cell Res (2021) 31 pp. 517-525 [ DOI: doi:10.1038/s41422-021-00487-9 Pubmed: 33731853 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- Heavy chain of p5a-3c12 (24 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with p5a-3c12_2b (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- P5a-3c12 (Complex from Homo sapiens)