Cyanophage A-1(L) neck/gp7-terminator
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8kef
Q-score: 0.471
Yu RC, Yang F, Zhang HY, Hou P, Du K, Zhu J, Cui N, Xu X, Chen Y, Li Q, Zhou CZ
Nat Commun (2024) 15 pp. 2654-2654 [ Pubmed: 38531972 DOI: doi:10.1038/s41467-024-47006-z ]
- Terminator gp8 (27 kDa, Protein from unclassified Caudoviricetes)
- Unclassified caudoviricetes (Virus from unclassified Caudoviricetes)
- Neck gp7 (14 kDa, Protein from unclassified Caudoviricetes)
Cyanophage A-1(L) neck/gp5-neck fiber
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 8keg
Q-score: 0.347
Yu RC, Yang F, Zhang HY, Hou P, Du K, Zhu J, Cui N, Xu X, Chen Y, Li Q, Zhou CZ
Nat Commun (2024) 15 pp. 2654-2654 [ Pubmed: 38531972 DOI: doi:10.1038/s41467-024-47006-z ]
- Neck gp5 (18 kDa, Protein from unclassified Caudoviricetes)
- Unclassified caudoviricetes (Virus from unclassified Caudoviricetes)
- Neck fiber gp82n (26 kDa, Protein from unclassified Caudoviricetes)
Cyanophage A-1(L) baseplate-initiators
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8kea
Q-score: 0.578
Yu RC, Yang F, Zhang HY, Hou P, Du K, Zhu J, Cui N, Xu X, Chen Y, Li Q, Zhou CZ
Nat Commun (2024) 15 pp. 2654-2654 [ Pubmed: 38531972 DOI: doi:10.1038/s41467-024-47006-z ]
- Central spike (29 kDa, Protein from unclassified Caudoviricetes)
- Wedge protein gp31 (42 kDa, Protein from unclassified Caudoviricetes)
- Tmp (73 kDa, Protein from unclassified Caudoviricetes)
- Hub (98 kDa, Protein from unclassified Caudoviricetes)
- Tube initiator (31 kDa, Protein from unclassified Caudoviricetes)
- Unclassified caudoviricetes (Virus from unclassified Caudoviricetes)
- Baseplate gp16 (17 kDa, Protein from unclassified Caudoviricetes)
- Sheath initiator (12 kDa, Protein from unclassified Caudoviricetes)
- Wedge protein gp32 (22 kDa, Protein from unclassified Caudoviricetes)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8kec
Q-score: 0.51
Yu RC, Yang F, Zhang HY, Hou P, Du K, Zhu J, Cui N, Xu X, Chen Y, Li Q, Zhou CZ
Nat Commun (2024) 15 pp. 2654-2654 [ Pubmed: 38531972 DOI: doi:10.1038/s41467-024-47006-z ]
- Short tail fiber (49 kDa, Protein from unclassified Caudoviricetes)
- Long tail fiber (39 kDa, Protein from unclassified Caudoviricetes)
- Unclassified caudoviricetes (Virus from unclassified Caudoviricetes)
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8kee
Q-score: 0.572
Yu RC, Yang F, Zhang HY, Hou P, Du K, Zhu J, Cui N, Xu X, Chen Y, Li Q, Zhou CZ
Nat Commun (2024) 15 pp. 2654-2654 [ Pubmed: 38531972 DOI: doi:10.1038/s41467-024-47006-z ]
- Sheath (54 kDa, Protein from unclassified Caudoviricetes)
- Tube (18 kDa, Protein from unclassified Caudoviricetes)
- Unclassified caudoviricetes (Virus from unclassified Caudoviricetes)
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8ts6
Q-score: 0.462
Yu RC, Yang F, Zhang HY, Hou P, Du K, Zhu J, Cui N, Xu X, Chen Y, Li Q, Zhou CZ
Nat Commun (2024) 15 pp. 2654-2654 [ Pubmed: 38531972 DOI: doi:10.1038/s41467-024-47006-z ]
- Uncultured cyanophage (Virus from uncultured cyanophage)
- Portal protein (60 kDa, Protein from uncultured cyanophage)
Allosteric regulation of nitrate transporter NRT via the signalling protein PII
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8w9m
Q-score: 0.556
Li B, Wang XQ, Li QY, Xu D, Li J, Hou WT, Chen Y, Jiang YL, Zhou CZ
PNAS (2024) 121 pp. e2318320121-e2318320121 [ Pubmed: 38457518 DOI: doi:10.1073/pnas.2318320121 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nitrate transporter nrtbcd complexed with atp (Complex from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrate transport permease protein (30 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrate transport atp-binding protein (31 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrate transport atp-binding protein (76 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8wm7
Q-score: 0.475
Li B, Wang XQ, Li QY, Xu D, Li J, Hou WT, Chen Y, Jiang YL, Zhou CZ
PNAS (2024) 121 pp. e2318320121-e2318320121 [ Pubmed: 38457518 DOI: doi:10.1073/pnas.2318320121 ]
- Nitrate transport permease protein (30 kDa, Protein from Nostoc sp.)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Nitrate transport atp-binding protein (76 kDa, Protein from Nostoc sp.)
- Complex of nitrate transporter nrtbcd with signling protein pii (Complex from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrogen regulatory protein p-ii (13 kDa, Protein from Nostoc sp.)
- Nitrate transport atp-binding protein (31 kDa, Protein from Nostoc sp.)
Cryo-EM structure of cyanobacterial nitrate/nitrite transporter NrtBCD in complex with nitrate
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 8wm8
Q-score: 0.463
Li B, Wang XQ, Li QY, Xu D, Li J, Hou WT, Chen Y, Jiang YL, Zhou CZ
PNAS (2024) 121 pp. e2318320121-e2318320121 [ Pubmed: 38457518 DOI: doi:10.1073/pnas.2318320121 ]
- Complex of nitrate transporter nrtbcd with nitrate (Complex from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrate transport permease protein (30 kDa, Protein from Nostoc sp.)
- Nitrate transport atp-binding protein (76 kDa, Protein from Nostoc sp.)
- Nitrate transport atp-binding protein (31 kDa, Protein from Nostoc sp.)
- Nitrate ion (62 Da, Ligand)