Cryo-ET structure of RuBisCO from 3.9 angstroms Synechococcus elongatus PCC 7942
Resolution: 3.9 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8wpz
Q-score: 0.444
Kong WW, Zhu Y, Zhao HR, Du K, Zhou RQ, Li B, Yang F, Hou P, Huang XH, Chen Y, Wang YC, Sun F, Jiang YL, Zhou CZ
Structure (2024) 32 pp. 1110-1120.e4 [ DOI: doi:10.1016/j.str.2024.05.007 Pubmed: 38823379 ]
- Ribulose bisphosphate carboxylase small subunit (13 kDa, Protein from Synechococcus elongatus PCC 7942 = FACHB-805)
- Ribulose bisphosphate carboxylase large chain (52 kDa, Protein from Synechococcus elongatus PCC 7942 = FACHB-805)
- Rubisco (Complex from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805))
Cryo-EM structure of the alpha-carboxysome shell vertex from Prochlorococcus MED4
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8wxb
Q-score: 0.337
Zhou RQ, Jiang YL, Li H, Hou P, Kong WW, Deng JX, Chen Y, Zhou CZ, Zeng Q
Nat Plants (2024) 10 pp. 661-672 [ Pubmed: 38589484 DOI: doi:10.1038/s41477-024-01660-9 ]
- Major carboxysome shell protein csos1 (10 kDa, Protein from Prochlorococcus sp. MED4)
- Carboxysome shell vertex protein csos4a (9 kDa, Protein from Prochlorococcus sp. MED4)
- Carboxysome assembly protein csos2 (82 kDa, Protein from Prochlorococcus sp. MED4)
- The shell vertex of alpha-carboxysome (3 MDa, Complex from Prochlorococcus sp. MED4)
Cryo-EM structure of the full transcription activation complex NtcA-NtcB-TAC
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8h3v
Q-score: 0.191
Han SJ, Jiang YL, You LL, Shen LQ, Wu X, Yang F, Cui N, Kong WW, Sun H, Zhou K, Meng HC, Chen ZP, Chen Y, Zhang Y, Zhou CZ
Nat Struct Mol Biol (2024) 31 pp. 293-299 [ Pubmed: 38177666 DOI: doi:10.1038/s41594-023-01149-7 ]
- Dna-directed rna polymerase subunit gamma (70 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Anabaena)
- Ntcb (34 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit beta (126 kDa, Protein from Anabaena)
- Full transcription activation complex with two activators ntca and ntcb (718 kDa, Complex from Anabaena)
- Dna-directed rna polymerase subunit beta' (147 kDa, Protein from Anabaena)
- Dna (125-mer) (38 kDa, DNA from Anabaena)
- Dna (125-mer) (38 kDa, DNA from Anabaena)
- Rna polymerase sigma factor siga (45 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit alpha (26 kDa, Protein from Anabaena)
- Ntca (24 kDa, Protein from Anabaena)
Cryo-EM structure of the transcription activation complex NtcA-TAC
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8h40
Q-score: 0.353
Han SJ, Jiang YL, You LL, Shen LQ, Wu X, Yang F, Cui N, Kong WW, Sun H, Zhou K, Meng HC, Chen ZP, Chen Y, Zhang Y, Zhou CZ
Nat Struct Mol Biol (2024) 31 pp. 293-299 [ Pubmed: 38177666 DOI: doi:10.1038/s41594-023-01149-7 ]
- Dna-directed rna polymerase subunit gamma (70 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit beta (126 kDa, Protein from Anabaena)
- Transcription activation complex with the global regulator ntca (580 kDa, Complex from Anabaena)
- Dna-directed rna polymerase subunit beta' (147 kDa, Protein from Anabaena)
- Dna (125-mer) (38 kDa, DNA from Anabaena)
- Dna (125-mer) (38 kDa, DNA from Anabaena)
- Rna polymerase sigma factor siga (45 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit alpha (26 kDa, Protein from Anabaena)
- Ntca (24 kDa, Protein from Anabaena)
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 8hdr
Q-score: 0.445
Yang F, Jiang YL, Zhang JT, Zhu J, Du K, Yu RC, Wei ZL, Kong WW, Cui N, Li WF, Chen Y, Li Q, Zhou CZ
PNAS (2023) 120 pp. e2213727120-e2213727120 [ Pubmed: 36656854 DOI: doi:10.1073/pnas.2213727120 ]
- Pam3 sheath protein (41 kDa, Protein from uncultured cyanophage)
- Pam3 connector protein (12 kDa, Protein from uncultured cyanophage)
- Pam3 tube protein (15 kDa, Protein from uncultured cyanophage)
- Uncultured cyanophage (Virus from uncultured cyanophage)
- Pam3 terminator protein (17 kDa, Protein from uncultured cyanophage)
- Pam3 adaptor protein (13 kDa, Protein from uncultured cyanophage)
Cyanophage Pam3 baseplate proteins
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 7yfz
Q-score: 0.528
Yang F, Jiang YL, Zhang JT, Zhu J, Du K, Yu RC, Wei ZL, Kong WW, Cui N, Li WF, Chen Y, Li Q, Zhou CZ
PNAS (2023) 120 pp. e2213727120-e2213727120 [ Pubmed: 36656854 DOI: doi:10.1073/pnas.2213727120 ]
- Pam3 plug gp18 (11 kDa, Protein from uncultured cyanophage)
- Pam3 baseplate wedge gp22 (32 kDa, Protein from uncultured cyanophage)
- Pam3 hub gp19 (25 kDa, Protein from uncultured cyanophage)
- Pam3 spike gp20 (23 kDa, Protein from uncultured cyanophage)
- Uncultured cyanophage (Virus from uncultured cyanophage)
- Pam3 baseplate wedge gp23 (26 kDa, Protein from uncultured cyanophage)
- Pam3 sheath initiator gp21 (13 kDa, Protein from uncultured cyanophage)
- Pam3 tube initiator gp17 (19 kDa, Protein from uncultured cyanophage)
Cyanophage Pam3 portal-adaptor
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 8hds
Q-score: 0.47
Yang F, Jiang YL, Zhang JT, Zhu J, Du K, Yu RC, Wei ZL, Kong WW, Cui N, Li WF, Chen Y, Li Q, Zhou CZ
PNAS (2023) 120 pp. e2213727120-e2213727120 [ Pubmed: 36656854 DOI: doi:10.1073/pnas.2213727120 ]
- Uncultured cyanophage (Virus from uncultured cyanophage)
- Pam3 portal protein (69 kDa, Protein from uncultured cyanophage)
- Pam3 adaptor protein (13 kDa, Protein from uncultured cyanophage)
Cyanophage Pam3 capsid asymmetric unit
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 8hdt
Q-score: 0.537
Yang F, Jiang YL, Zhang JT, Zhu J, Du K, Yu RC, Wei ZL, Kong WW, Cui N, Li WF, Chen Y, Li Q, Zhou CZ
PNAS (2023) 120 pp. e2213727120-e2213727120 [ Pubmed: 36656854 DOI: doi:10.1073/pnas.2213727120 ]
- Uncultured cyanophage (Virus from uncultured cyanophage)
- Major capsid (34 kDa, Protein from uncultured cyanophage)
- Cement (17 kDa, Protein from uncultured cyanophage)
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8hdw
Q-score: 0.516
Yang F, Jiang YL, Zhang JT, Zhu J, Du K, Yu RC, Wei ZL, Kong WW, Cui N, Li WF, Chen Y, Li Q, Zhou CZ
PNAS (2023) 120 pp. e2213727120-e2213727120 [ Pubmed: 36656854 DOI: doi:10.1073/pnas.2213727120 ]
- Uncultured cyanophage (Virus from uncultured cyanophage)
- Pam3 sheath protein (41 kDa, Protein from uncultured cyanophage)
- Pam3 tube (15 kDa, Protein from uncultured cyanophage)
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 7ypx
Q-score: 0.398
Wei ZL, Yang F, Li B, Hou P, Kong WW, Wang J, Chen Y, Jiang YL, Zhou CZ
Viruses (2022) 14 [ Pubmed: 36298815 DOI: doi:10.3390/v14102260 ]
- Pam3 tail fiber proreins (28 kDa, Protein from uncultured cyanophage)
- Tail fiber chaperone (17 kDa, Protein from uncultured cyanophage)
- Pam3 tail fiber (Complex from uncultured cyanophage)