Allosteric regulation of nitrate transporter NRT via the signalling protein PII
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8w9m
Q-score: 0.556
Li B, Wang XQ, Li QY, Xu D, Li J, Hou WT, Chen Y, Jiang YL, Zhou CZ
PNAS (2024) 121 pp. e2318320121-e2318320121 [ Pubmed: 38457518 DOI: doi:10.1073/pnas.2318320121 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nitrate transporter nrtbcd complexed with atp (Complex from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrate transport permease protein (30 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrate transport atp-binding protein (31 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrate transport atp-binding protein (76 kDa, Protein from Nostoc sp. PCC 7120 = FACHB-418)
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8wm7
Q-score: 0.475
Li B, Wang XQ, Li QY, Xu D, Li J, Hou WT, Chen Y, Jiang YL, Zhou CZ
PNAS (2024) 121 pp. e2318320121-e2318320121 [ Pubmed: 38457518 DOI: doi:10.1073/pnas.2318320121 ]
- Nitrate transport permease protein (30 kDa, Protein from Nostoc sp.)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Nitrate transport atp-binding protein (76 kDa, Protein from Nostoc sp.)
- Complex of nitrate transporter nrtbcd with signling protein pii (Complex from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrogen regulatory protein p-ii (13 kDa, Protein from Nostoc sp.)
- Nitrate transport atp-binding protein (31 kDa, Protein from Nostoc sp.)
Cryo-EM structure of cyanobacterial nitrate/nitrite transporter NrtBCD in complex with nitrate
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 8wm8
Q-score: 0.463
Li B, Wang XQ, Li QY, Xu D, Li J, Hou WT, Chen Y, Jiang YL, Zhou CZ
PNAS (2024) 121 pp. e2318320121-e2318320121 [ Pubmed: 38457518 DOI: doi:10.1073/pnas.2318320121 ]
- Complex of nitrate transporter nrtbcd with nitrate (Complex from Nostoc sp. PCC 7120 = FACHB-418)
- Nitrate transport permease protein (30 kDa, Protein from Nostoc sp.)
- Nitrate transport atp-binding protein (76 kDa, Protein from Nostoc sp.)
- Nitrate transport atp-binding protein (31 kDa, Protein from Nostoc sp.)
- Nitrate ion (62 Da, Ligand)
Cryo-EM structure of SIDT1 in complex with phosphatidic acid
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8jul
Q-score: 0.55
Sun CR, Xu D, Yang F, Hou Z, Luo Y, Zhang CY, Shan G, Huang G, Yao X, Chen Y, Li Q, Zhou CZ
Cell Res (2024) 34 pp. 84-87 [ DOI: doi:10.1038/s41422-023-00889-x Pubmed: 37932444 ]
- 1,2-dilauroyl-sn-glycero-3-phosphate (535 Da, Ligand)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Sid1 transmembrane family member 1 (93 kDa, Protein from Homo sapiens)
- Cryo-em structure of sidt1 in complex with phosphatidic acid (Complex from Homo sapiens)
Cryo-EM structure of SIDT1 E555Q mutant
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 8jun
Q-score: 0.574
Sun CR, Xu D, Yang F, Hou Z, Luo Y, Zhang CY, Shan G, Huang G, Yao X, Chen Y, Li Q, Zhou CZ
Cell Res (2024) 34 pp. 84-87 [ DOI: doi:10.1038/s41422-023-00889-x Pubmed: 37932444 ]
- Cryo-em structure of sidt1 e555q mutant (Complex from Homo sapiens)
- Sid1 transmembrane family member 1 (93 kDa, Protein from Homo sapiens)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of the human cholesterol transporter ABCG1 in complex with cholesterol
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 7fdv
Q-score: 0.528
Xu D, Li Y, Yang F, Sun CR, Pan J, Wang L, Chen ZP, Fang SC, Yao X, Hou WT, Zhou CZ, Chen Y
Cell Rep (2022) 38 pp. 110298-110298 [ DOI: doi:10.1016/j.celrep.2022.110298 Pubmed: 35081353 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- The complex of human abcg1 with cholesterol and atp (152 kDa, Complex from Homo sapiens)
- Atp-binding cassette sub-family g member 1 (75 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- [(e,2s,3r)-2-(hexadecanoylamino)-3-oxidanyl-octadec-4-enyl] 2-(trimethylazaniumyl)ethyl phosphate (703 Da, Ligand)
Cryo-EM structure of human very long-chain fatty acid ABC transporter ABCD1
Cryo-EM structure of ATP-bound human very long-chain fatty acid ABC transporter ABCD1
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7vx8
Q-score: 0.594
Chen ZP, Xu D, Wang L, Mao YX, Li Y, Cheng MT, Zhou CZ, Hou WT, Chen Y
Nat Commun (2022) 13 pp. 3299-3299 [ DOI: doi:10.1038/s41467-022-30974-5 Pubmed: 35676282 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp-bound human peroxisomal abcd1 (175 MDa, Complex from Caenorhabditis elegans)
- Magnesium ion (24 Da, Ligand)
- Peroxisomal membrane protein related,atp-binding cassette sub-family d member 1 (87 kDa, Protein from Homo sapiens)
Cryo-EM structure of C22:0-CoA bound human very long-chain fatty acid ABC transporter ABCD1
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 7vzb
Q-score: 0.429
Chen ZP, Xu D, Wang L, Mao YX, Li Y, Cheng MT, Zhou CZ, Hou WT, Chen Y
Nat Commun (2022) 13 pp. 3299-3299 [ DOI: doi:10.1038/s41467-022-30974-5 Pubmed: 35676282 ]
- Cholesterol hemisuccinate (486 Da, Ligand)
- S-[2-[3-[[(2r)-4-[[[(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] docosanethioate (1 kDa, Ligand)
- Peroxisomal membrane protein related,atp-binding cassette sub-family d member 1 (87 kDa, Protein from Homo sapiens)
- Human peroxisomal abcd1 (175 MDa, Cellular component from Caenorhabditis elegans)
Human bile salt exporter ABCB11 in complex with taurocholate
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 7e1a
Q-score: 0.412
Wang L, Hou WT, Wang J, Xu D, Guo C, Sun L, Ruan K, Zhou CZ, Chen Y
Cell Res (2022) 32 pp. 501-504 [ DOI: doi:10.1038/s41422-021-00611-9 Pubmed: 35043010 ]
- Taurocholic acid (515 Da, Ligand)
- Bile salt export pump (146 kDa, Protein from Homo sapiens)
- Human abcb11 in complex with taurocholate (150 kDa, Complex from Homo sapiens)