The tetramer Structure of DSR2 alone
Zhu K, Shang K, Wang L, Yu X, Hua L, Zhang W, Qin B, Wang J, Gao X, Zhu H, Cui S
Commun Biol (2025) 8 pp. 297-297 [ Pubmed: 39994439 DOI: doi:10.1038/s42003-025-07743-3 ]
- The dimer of dsr2 (Complex from Bacillus subtilis A29)
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis A29)
The Dimer Structure of DSR2-SPR
Zhu K, Shang K, Wang L, Yu X, Hua L, Zhang W, Qin B, Wang J, Gao X, Zhu H, Cui S
Commun Biol (2025) 8 pp. 297-297 [ Pubmed: 39994439 DOI: doi:10.1038/s42003-025-07743-3 ]
- The dimer of dsr2 (Complex from Bacillus subtilis A29)
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis A29)
- Spr (29 kDa, Protein from Bacillus subtilis A29)
The tetramer Structure of SPR-DSR2 complex
Zhu K, Shang K, Wang L, Yu X, Hua L, Zhang W, Qin B, Wang J, Gao X, Zhu H, Cui S
Commun Biol (2025) 8 pp. 297-297 [ Pubmed: 39994439 DOI: doi:10.1038/s42003-025-07743-3 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis A29)
- Spr (29 kDa, Protein from Bacillus subtilis A29)
- The tetramer of spr-dsr2 (Complex from Bacillus subtilis A29)
The Dimer Structure of DSR2-SPR with NAD
Zhu K, Shang K, Wang L, Yu X, Hua L, Zhang W, Qin B, Wang J, Gao X, Zhu H, Cui S
Commun Biol (2025) 8 pp. 297-297 [ Pubmed: 39994439 DOI: doi:10.1038/s42003-025-07743-3 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis A29)
- The dimer of dsr2-spr with nad (Complex from Bacillus subtilis A29)
- Spr (29 kDa, Protein from Bacillus subtilis A29)
The tetramer Structure of DSR2-SPR with NAD
Zhu K, Shang K, Wang L, Yu X, Hua L, Zhang W, Qin B, Wang J, Gao X, Zhu H, Cui S
Commun Biol (2025) 8 pp. 297-297 [ Pubmed: 39994439 DOI: doi:10.1038/s42003-025-07743-3 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis A29)
- The tetramer of dsr2-spr with nad (Complex from Bacillus subtilis A29)
- Spr (29 kDa, Protein from Bacillus subtilis A29)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7yrg
Q-score: 0.227
Huang L, Wang Y, Long H, Zhu H, Wen Z, Zhang L, Zhang W, Guo Z, Wang L, Tang F, Hu J, Bao K, Zhu P, Li G, Zhou Z
Mol Cell (2023) 83 pp. 2884-2895.e7 [ Pubmed: 37536340 DOI: doi:10.1016/j.molcel.2023.07.001 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone (Complex from Homo sapiens)
- Histone h2b 1.1 (10 kDa, Protein from Xenopus laevis)
- Histone methyltransferase and nucleosome complex (Complex)
- S-adenosylmethionine (398 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna (146-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.2 (12 kDa, Protein from Xenopus laevis)
- Histone,suv420h1 (Complex from Xenopus laevis)
- Histone h2a.z (12 kDa, Protein from Homo sapiens)
- [histone h4]-n-methyl-l-lysine20 n-methyltransferase kmt5b (32 kDa, Protein from Homo sapiens)
Cryo-EM structure of the HCMV pentamer bound by Fabs 2-18 and 8I21
Resolution: 4.02 Å
EM Method: Single-particle
Fitted PDBs: 7kbb
Q-score: 0.274
Wrapp D, Ye X, Ku Z, Su H, Jones HG, Wang N, Mishra AK, Freed DC, Li F, Tang A, Li L, Jaijyan DK, Zhu H, Wang D, Fu TM, Zhang N, An Z, McLellan JS
Sci Adv (2022) 8 pp. eabm2546-eabm2546 [ Pubmed: 35275718 DOI: doi:10.1126/sciadv.abm2546 ]
- 2-18 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Fab 8i21 (Complex from Homo sapiens)
- Hcmv pentamer bound by antibodies 2-18 and 8i21 (280 kDa, Complex)
- Envelope glycoprotein ul130 (21 kDa, Protein from Human cytomegalovirus)
- Fab 2-18 (Complex from Homo sapiens)
- Envelope protein ul128 (16 kDa, Protein from Human cytomegalovirus)
- Ul131a (13 kDa, Protein from Human cytomegalovirus)
- 8i21 fab light chain (23 kDa, Protein from Homo sapiens)
- 8i21 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Hcmv pentamer (refinement focused on three of the subunits) (Complex from Human betaherpesvirus 5)
- 2-18 fab light chain (23 kDa, Protein from Homo sapiens)
Human AAA+ ATPase VCP mutant - T76E, AMP-PNP bound form, Conformation I
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7bpb
Q-score: 0.366
Zhu K, Cai Y, Si X, Ye Z, Gao Y, Liu C, Wang R, Ma Z, Zhu H, Zhang L, Li S, Zhang H, Yue J
Cell Death Differ. (2022) [ Pubmed: 35430615 DOI: doi:10.1038/s41418-022-01000-4 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Transitional endoplasmic reticulum atpase (89 kDa, Protein from Homo sapiens)
- Transitional endoplasmic reticulum atpase, vcp. (97 MDa, Complex from Homo sapiens)
