Cryo-EM structure of Cas8-HNH system at full R-loop state
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8z0k
Q-score: 0.551
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ Pubmed: 39251884 DOI: doi:10.1038/s44318-024-00229-8 ]
- Type i-f crispr-associated endoribonuclease cas6/csy4 (20 kDa, Protein from Selenomonas sp.)
- Dna (37-mer) (11 kDa, DNA from Selenomonas sp.)
- Dna (5'-d(p*gp*tp*gp*cp*gp*gp*a)-3') (2 kDa, DNA from Selenomonas sp.)
- Cryo-em structure of cas8-hnh system at full r-loop state (Complex from Selenomonas sp.)
- Hnh endonuclease (39 kDa, Protein from Selenomonas sp.)
- Rna (69-mer) (22 kDa, RNA from Selenomonas sp.)
- Type i-f crispr-associated protein csy3 (37 kDa, Protein from Selenomonas sp.)
- Hypothetical protein j6n51_11000 (28 kDa, Protein from Selenomonas sp.)
Cryo-EM structure of Cas8-HNH system at partial R-loop state
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8z0l
Q-score: 0.549
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ Pubmed: 39251884 DOI: doi:10.1038/s44318-024-00229-8 ]
- Type i-f crispr-associated endoribonuclease cas6/csy4 (20 kDa, Protein from Selenomonas sp.)
- Dna (5'-d(p*gp*tp*gp*cp*gp*gp*a)-3') (2 kDa, DNA from Selenomonas sp.)
- Dna (32-mer) (9 kDa, DNA from Selenomonas sp.)
- Cryo-em structure of cas8-hnh system at partial r-loop state (Complex from Selenomonas sp.)
- Hnh endonuclease (39 kDa, Protein from Selenomonas sp.)
- Rna (69-mer) (22 kDa, RNA from Selenomonas sp.)
- Type i-f crispr-associated protein csy3 (37 kDa, Protein from Selenomonas sp.)
- Hypothetical protein j6n51_11000 (28 kDa, Protein from Selenomonas sp.)
Cryo-EM structure of Cas8-HNH system at target free state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8zdy
Q-score: 0.42
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ Pubmed: 39251884 DOI: doi:10.1038/s44318-024-00229-8 ]
- A protein (28 kDa, Protein from Selenomonas sp.)
- A protein (20 kDa, Protein from Selenomonas sp.)
- A protein (38 kDa, Protein from Selenomonas sp.)
- A protein (39 kDa, Protein from Selenomonas sp.)
- A protein (Complex from Selenomonas sp.)
- Rna (58-mer) (22 kDa, RNA from Selenomonas sp.)
Cryo-EM structure of Cas8-HNH system at ssDNA-bound state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8znr
Q-score: 0.505
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ Pubmed: 39251884 DOI: doi:10.1038/s44318-024-00229-8 ]
- Protein structure (20 kDa, Protein from Selenomonas sp.)
- Rna (56-mer) (22 kDa, RNA from Selenomonas sp.)
- Protein structure (39 kDa, Protein from Selenomonas sp.)
- Protein structure (37 kDa, Protein from Selenomonas sp.)
- Protein structure (28 kDa, Protein from Selenomonas sp.)
- Protein complex (Complex from Selenomonas sp.)
- Dna (35-mer) (10 kDa, DNA from Selenomonas sp.)
Structure of HKU1A RBD with TMPRSS2
Gao X, Zhu K, Wang L, Shang K, Hua L, Qin B, Zhu H, Ding W, Cui S
Cell Discov (2024) 10 pp. 84-84 [ Pubmed: 39112468 DOI: doi:10.1038/s41421-024-00717-5 ]
- Spike protein s1 (41 kDa, Protein from Candidatus Accumulibacter adiacens)
- Hku1a-rbd with tmprss2 receptor (Complex from Homo sapiens)
- Transmembrane protease serine 2 (42 kDa, Protein from Homo sapiens)
Structure of HKU1B RBD with TMPRSS2
Gao X, Zhu K, Wang L, Shang K, Hua L, Qin B, Zhu H, Ding W, Cui S
Cell Discov (2024) 10 pp. 84-84 [ Pubmed: 39112468 DOI: doi:10.1038/s41421-024-00717-5 ]
- Spike protein s1 (31 kDa, Protein from Candidatus Accumulibacter adiacens)
- Hku1b-rbd with tmprss2 receptor (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protease serine 2 (42 kDa, Protein from Homo sapiens)
Structure of the wild-type Arabidopsis ABCB19 in the apo state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8woi
Q-score: 0.49
Ying W, Wang Y, Wei H, Luo Y, Ma Q, Zhu H, Janssens H, Vukasinovic N, Kvasnica M, Winne JM, Gao Y, Tan S, Friml J, Liu X, Russinova E, Sun L
Science (2024) 383 pp. eadj4591-eadj4591 [ DOI: doi:10.1126/science.adj4591 Pubmed: 38513023 ]
Structure of the wild-type Arabidopsis ABCB19 in the brassinolide-bound state
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8wom
Q-score: 0.451
Ying W, Wang Y, Wei H, Luo Y, Ma Q, Zhu H, Janssens H, Vukasinovic N, Kvasnica M, Winne JM, Gao Y, Tan S, Friml J, Liu X, Russinova E, Sun L
Science (2024) 383 pp. eadj4591-eadj4591 [ DOI: doi:10.1126/science.adj4591 Pubmed: 38513023 ]
Structure of the wild-type Arabidopsis ABCB19 in the brassinolide and AMP-PNP bound state
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8woo
Q-score: 0.401
Ying W, Wang Y, Wei H, Luo Y, Ma Q, Zhu H, Janssens H, Vukasinovic N, Kvasnica M, Winne JM, Gao Y, Tan S, Friml J, Liu X, Russinova E, Sun L
Science (2024) 383 pp. eadj4591-eadj4591 [ DOI: doi:10.1126/science.adj4591 Pubmed: 38513023 ]
- Abc transporter b family member 19 (136 kDa, Protein from Arabidopsis thaliana)
- Purified wild-type abcb19 protein in complex with brassinolide and amp-pnp (Cellular component from Arabidopsis thaliana)
- Magnesium ion (24 Da, Ligand)
- Brassinolide (480 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
Structure of the Arabidopsis E529Q/E1174Q ABCB19 in the ATP bound state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8wp0
Q-score: 0.464
Ying W, Wang Y, Wei H, Luo Y, Ma Q, Zhu H, Janssens H, Vukasinovic N, Kvasnica M, Winne JM, Gao Y, Tan S, Friml J, Liu X, Russinova E, Sun L
Science (2024) 383 pp. eadj4591-eadj4591 [ DOI: doi:10.1126/science.adj4591 Pubmed: 38513023 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Abc transporter b family member 19 (136 kDa, Protein from Arabidopsis thaliana)
- Purified e529q/e1174q mutant abcb19 protein in complex with atp (Cellular component from Arabidopsis thaliana)
- Magnesium ion (24 Da, Ligand)