membrane region of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ap7
Q-score: 0.613
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 1b of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8apb
Q-score: 0.415
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atptb14 (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit delta (20 kDa, Protein from Trypanosoma brucei brucei)
- Oligomycin-sensivity-conferring protein (28 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 1c of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8apc
Q-score: 0.441
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Oligomycin sensitiviy conferring protein (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 1e of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8ape
Q-score: 0.332
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 2a of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8apf
Q-score: 0.311
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 2b of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8apg
Q-score: 0.437
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 3 of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8apk
Q-score: 0.417
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Trypanosoma brucei mitochondrial ribosome large subunit assembly intermediate
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7aoi
Q-score: 0.486
Tobiasson V, Gahura O, Aibara S, Baradaran R, Zikova A, Amunts A
EMBO J (2021) 40 pp. e106292-e106292 [ Pubmed: 33576519 DOI: doi:10.15252/embj.2020106292 ]
- Spou rrna methylase family (48 kDa, Protein from Trypanosoma brucei)
- Ml95 (16 kDa, Protein from Trypanosoma brucei)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Dead-box helicase, putative,mt-laf2 (76 kDa, Protein from Trypanosoma brucei)
- Bl28m (25 kDa, Protein from Trypanosoma brucei)
- Ml94 (11 kDa, Protein from Trypanosoma brucei)
- Mitochondrial ribosomal protein l51 / s25 / ci-b8 domain containing protein (22 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l4/l1 family (51 kDa, Protein from Trypanosoma brucei)
- Ml86 (19 kDa, Protein from Trypanosoma brucei)
- Bl19m (16 kDa, Protein from Trypanosoma brucei)
- Mt-laf7,mt-laf7 (18 kDa, Protein from Trypanosoma brucei)
- Rna uridylyltransferase (17 kDa, Protein from Trypanosoma brucei)
- Ml70 (47 kDa, Protein from Trypanosoma brucei)
- Unk10 (1 kDa, Protein from Trypanosoma brucei)
- Lim domain containing protein,ml90 (13 kDa, Protein from Trypanosoma brucei)
- Ml81 (25 kDa, Protein from Trypanosoma brucei)
- Zinc ion (65 Da, Ligand)
- Ml67 (89 kDa, Protein from Trypanosoma brucei)
- Ml101 (21 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l22p/l17e (31 kDa, Protein from Trypanosoma brucei)
- Ml89 (22 kDa, Protein from Trypanosoma brucei)
- Complex1-lyr-like (10 kDa, Protein from Trypanosoma brucei)
- Ul30m (17 kDa, Protein from Trypanosoma brucei)
- Ml76 (18 kDa, Protein from Trypanosoma brucei)
- Ribosomal_l9 domain-containing protein (25 kDa, Protein from Trypanosoma brucei)
- Mt-laf12 (70 kDa, Protein from Trypanosoma brucei)
- 50s ribosomal protein l17 (30 kDa, Protein from Trypanosoma brucei)
- Bl33m (17 kDa, Protein from Trypanosoma brucei)
- Ml74 (25 kDa, Protein from Trypanosoma brucei)
- Unk7 (1 kDa, Protein from Trypanosoma brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Unk8 (1 kDa, Protein from Trypanosoma brucei)
- Unk2 (657 Da, Protein from Trypanosoma brucei)
- Mt-lsu rrna (242 kDa, RNA from Trypanosoma brucei)
- Mt-laf4 (69 kDa, Protein from Trypanosoma brucei)
- Pseudouridylate synthase, putative (42 kDa, Protein from Trypanosoma brucei)
- Gtp-binding protein, putative,mt-enga (60 kDa, Protein from Trypanosoma brucei)
- Ml71 (49 kDa, Protein from Trypanosoma brucei)
- Mt-laf14 (78 kDa, Protein from Trypanosoma brucei)
- Unk4 (586 Da, Protein from Trypanosoma brucei)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ribosomal protein l11,ul11m (29 kDa, Protein from Trypanosoma brucei)
- Unk3 (1 kDa, Protein from Trypanosoma brucei)
- Ml68,ml68,ml68 (40 kDa, Protein from Trypanosoma brucei)
- Ml78 (31 kDa, Protein from Trypanosoma brucei)
- Ml49 (20 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l23 (19 kDa, Protein from Trypanosoma brucei)
- Unk9 (2 kDa, Protein from Trypanosoma brucei)
- Ml52 (14 kDa, Protein from Trypanosoma brucei)
- Peptidyl-prolyl cis-trans isomerase (20 kDa, Protein from Trypanosoma brucei)
- Ml93 (16 kDa, Protein from Trypanosoma brucei)
- Ml85 (16 kDa, Protein from Trypanosoma brucei)
- Ml64,ml64 (23 kDa, Protein from Trypanosoma brucei)
- Unk1 (3 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l3 mitochondrial, putative (42 kDa, Protein from Trypanosoma brucei)
- Ml98 (10 kDa, Protein from Trypanosoma brucei)
- Peptidyl-prolyl cis-trans isomerase (20 kDa, Protein from Trypanosoma brucei)
- Ml87 (9 kDa, Protein from Trypanosoma brucei)
- Acyl carrier protein (9 kDa, Protein from Trypanosoma brucei)
- Trypanosoma brucei mitochondrial ribosome large subunit assembly intermediate (2 MDa, Complex from Trypanosoma brucei)
- Unk11 (3 kDa, Protein from Trypanosoma brucei)
- Mt-laf15_1 (21 kDa, Protein from Trypanosoma brucei)
- Mt-laf8 (58 kDa, Protein from Trypanosoma brucei)
- Ul29m (53 kDa, Protein from Trypanosoma brucei)
- Ml100,ml100 (10 kDa, Protein from Trypanosoma brucei)
- Unk5 (870 Da, Protein from Trypanosoma brucei)
- Ul24m (39 kDa, Protein from Trypanosoma brucei)
- Ml41 (13 kDa, Protein from Trypanosoma brucei)
- Magnesium ion (24 Da, Ligand)
- Tetratricopeptide repeat (48 kDa, Protein from Trypanosoma brucei)
- Lipase (class 3) (18 kDa, Protein from Trypanosoma brucei)
- Gtp-binding protein (33 kDa, Protein from Trypanosoma brucei)
- Ml63 (17 kDa, Protein from Trypanosoma brucei)
- Mitochondrial rna binding complex 1 subunit (37 kDa, Protein from Trypanosoma brucei)
- Ml99 (9 kDa, Protein from Trypanosoma brucei)
- Bl32m (6 kDa, Protein from Trypanosoma brucei)
- Bl20m (22 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l21 (20 kDa, Protein from Trypanosoma brucei)
- Ml53 (33 kDa, Protein from Trypanosoma brucei)
- Ribosomal_l18e/l15p domain-containing protein (41 kDa, Protein from Trypanosoma brucei)
- Unk6/mt-laf15_2 (9 kDa, Protein from Trypanosoma brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 50s ribosomal protein l13 (20 kDa, Protein from Trypanosoma brucei)
- Ml42 (15 kDa, Protein from Trypanosoma brucei)
- Ml84 (23 kDa, Protein from Trypanosoma brucei)
- Ml80 (25 kDa, Protein from Trypanosoma brucei)
- 50s ribosomal protein l14 (19 kDa, Protein from Trypanosoma brucei)
- Chaperone protein dnaj, putative,ml77,chaperone protein dnaj, putative (30 kDa, Protein from Trypanosoma brucei)
- Mt-laf19 (11 kDa, Protein from Trypanosoma brucei)