PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8r9w
Q-score: 0.531
Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
Nat Commun (2024) 15 pp. 5330-5330 [ DOI: doi:10.1038/s41467-024-49693-0 Pubmed: 38909062 ]
- 22c10 antibody light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pdcov spike glycoprotein ectodomain in complex with the 22c10 antibody fab fragment (520 kDa, Complex from Homo sapiens)
- Spike protein (119 kDa, Protein from Deltacoronavirus)
- 22c10 antibody heavy chain (13 kDa, Protein from Homo sapiens)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8r9x
Q-score: 0.542
Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
Nat Commun (2024) 15 pp. 5330-5330 [ DOI: doi:10.1038/s41467-024-49693-0 Pubmed: 38909062 ]
- Local refinement of the pdcov spike glycoprotein ectodomain in complex with the 22c10 antibody fab fragment (78 kDa, Complex from Homo sapiens)
- 22c10 antibody light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pdcov spike glycoprotein s1a domain (119 kDa, Protein from Homo sapiens)
- 22c10 antibody heavy chain (13 kDa, Protein from Homo sapiens)
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 42H3 antibody Fab fragments
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8r9y
Q-score: 0.522
Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
Nat Commun (2024) 15 pp. 5330-5330 [ DOI: doi:10.1038/s41467-024-49693-0 Pubmed: 38909062 ]
- 42h3 antibody heavy chain (23 kDa, Protein from Homo sapiens)
- Spike protein (22 kDa, Protein from Porcine deltacoronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 42h3 antibody light chain (23 kDa, Protein from Homo sapiens)
- 67b12 antibody light chain (23 kDa, Protein from Homo sapiens)
- Pdcov spike s1b domain in complex with the 67b12 and 42h3 antibody fab fragments (105 kDa, Complex from Homo sapiens)
- 67b12 antibody heavy chain (22 kDa, Protein from Homo sapiens)
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 46E6 antibody Fab fragments
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8r9z
Q-score: 0.539
Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ
Nat Commun (2024) 15 pp. 5330-5330 [ DOI: doi:10.1038/s41467-024-49693-0 Pubmed: 38909062 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 46e6 antibody heavy chain (23 kDa, Protein from Homo sapiens)
- 67b12 antibody light chain (23 kDa, Protein from Homo sapiens)
- Spike protein (12 kDa, Protein from Porcine deltacoronavirus)
- 46e6 antibody heavy chain (23 kDa, Protein from Homo sapiens)
- Pdcov spike s1b domain in complex with the 67b12 and 46e6 antibody fab fragments (105 kDa, Complex from Homo sapiens)
- 67b12 antibody heavy chain (22 kDa, Protein from Homo sapiens)