Cryo-EM structure of the ARP2/3 1B5CL isoform complex.
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6yw6
Q-score: 0.32
von Loeffelholz O, Purkiss A, Cao L, Kjaer S, Kogata N, Romet-Lemonne G, Way M, Moores CA
Biol Open (2020) 9 [ Pubmed: 32661131 DOI: doi:10.1242/bio.054304 ]
- Actin-related protein 2 (44 kDa, Protein from Homo sapiens)
- Actin-related protein 3 (47 kDa, Protein from Homo sapiens)
- Actin-related protein 2/3 complex subunit 5-like protein (16 kDa, Protein from Homo sapiens)
- Actin-related protein 2/3 complex subunit 3 (20 kDa, Protein from Homo sapiens)
- Arp2/3 (250 MDa, Complex from Homo sapiens)
- Arpc1b (41 kDa, Protein from Homo sapiens)
- Actin-related protein 2/3 complex subunit 4 (19 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Actin-related protein 2/3 complex subunit 2 (34 kDa, Protein from Homo sapiens)
Cryo-EM structure of the ARP2/3 1A5C isoform complex.
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6yw7
Q-score: 0.194
von Loeffelholz O, Purkiss A, Cao L, Kjaer S, Kogata N, Romet-Lemonne G, Way M, Moores CA
Biol Open (2020) 9 [ Pubmed: 32661131 DOI: doi:10.1242/bio.054304 ]
- Actin-related protein 2 (44 kDa, Protein from Homo sapiens)
- Actin-related protein 3 (47 kDa, Protein from Homo sapiens)
- Actin-related protein 2/3 complex subunit 3 (20 kDa, Protein from Homo sapiens)
- Actin-related protein 2/3 complex subunit 5 (16 kDa, Protein from Homo sapiens)
- Actin-related protein 2/3 complex subunit 4 (19 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Actin-related protein 2/3 complex subunit 1a (41 kDa, Protein from Homo sapiens)
- Actin-related protein 2/3 complex subunit 2 (34 kDa, Protein from Homo sapiens)
- Human arp2/3 1a5c isoform complex (Complex from Homo sapiens)
Cryo-EM map of human ribosome in hybrid-PRE state
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6y57
Q-score: 0.462
Bhaskar V, Graff-Meyer A, Schenk AD, Cavadini S, von Loeffelholz O, Natchiar SK, Artus-Revel CG, Hotz HR, Bretones G, Klaholz BP, Chao JA
Cell Rep (2020) 31 pp. 107473-107473 [ Pubmed: 32268098 DOI: doi:10.1016/j.celrep.2020.03.037 ]
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 5.8s ribosomal rna (50 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- Mrna (4 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (602 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- Human ribosomes in the classical-pre state (4 MDa, Complex from Homo sapiens)
- 5s ribosomal rna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- A/p trna (24 kDa, RNA from Homo sapiens)
- P/e trna (24 kDa, RNA from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 28s ribosomal rna (1 MDa, RNA from Homo sapiens)
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 5mm7
Q-score: 0.207
von Loeffelholz O, Ann Moores C
J Struct Biol (2019) [ Pubmed: 31288039 DOI: doi:10.1016/j.jsb.2019.07.003 ]
- Tubulin beta chain (Complex from Sus scrofa)
- Tubulin beta chain (47 kDa, Protein from Sus scrofa)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Kinesin-5 (49 kDa, Protein from Ustilago maydis)
- Tubulin alpha-1a chain (Complex from Sus scrofa)
- Kinesin-5 (Complex from Ustilago maydis)
- Ternary complex of alpha-beta-tubulin stabilized by taxol and decorated with ustilago maydis kinesin-5 motordomain with n-terminal extension (Complex)
- Tubulin alpha-1a chain (48 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Taxol (853 Da, Ligand)
Resolution: 9.3 Å
EM Method: Single-particle
Fitted PDBs: 5m5i, 5m5l, 5m5m, 5m5n, 5m5o
Q-score: 0.0885
Britto M, Goulet A, Rizvi S, von Loeffelholz O, Moores CA, Cross RA
PNAS (2016) 113 pp. E7483-E7489 [ DOI: doi:10.1073/pnas.1611581113 Pubmed: 27834216 ]
- Tubulin alpha-1d chain (50 kDa, Protein from Bos taurus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta-2b chain (49 kDa, Protein from Bos taurus)
- Microtubule-bound s.pombe kinesin-5 motor domain in the amppnp state (140 kDa, Complex)
- Magnesium ion (24 Da, Ligand)
- Kinesin-like protein cut7 (40 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Taxol (853 Da, Ligand)