Near-atomic structure of five-fold averaged PBCV-1 capsid
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8h2i
Q-score: 0.362
Shao Q, Agarkova IV, Noel EA, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q
Nat Commun (2022) 13 pp. 6476-6476 [ Pubmed: 36309542 DOI: doi:10.1038/s41467-022-34218-4 ]
- P1v1 (57 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Paramecium bursaria chlorella virus 1 (Virus from Paramecium bursaria Chlorella virus 1)
- P13 (11 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P21 (141 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Major capsid protein (mcp) (48 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P2 (63 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P15 (18 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P9 (23 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P23 (140 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv4 (45 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P17 (9 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P5 (16 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv1 (58 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P6 (24 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P19 (43 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P11 (23 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv5 (45 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P3 (19 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P22 (137 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P18 (16 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P4 (20 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P12 (17 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P20 (137 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv3 (45 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P8 (19 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P16 (9 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv2 (55 kDa, Protein from Paramecium bursaria Chlorella virus 1)
The unexpanded head structure of phage T4
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 7vrt
Q-score: 0.202
Fang Q, Tang WC, Fokine A, Mahalingam M, Shao Q, Rossmann MG, Rao VB
PNAS (2022) 119 pp. e2203272119-e2203272119 [ Pubmed: 36161892 DOI: doi:10.1073/pnas.2203272119 ]
- Major capsid protein (56 kDa, Protein from Enterobacteria phage T4)
- Capsid vertex protein (47 kDa, Protein from Enterobacteria phage T4)
- Escherichia virus t4 (Virus from Escherichia virus T4)
The expanded head structure of phage T4
Fang Q, Tang WC, Fokine A, Mahalingam M, Shao Q, Rossmann MG, Rao VB
PNAS (2022) 119 pp. e2203272119-e2203272119 [ Pubmed: 36161892 DOI: doi:10.1073/pnas.2203272119 ]
- Small outer capsid protein (9 kDa, Protein from Enterobacteria phage T4)
- Major capsid protein (56 kDa, Protein from Enterobacteria phage T4)
- Capsid vertex protein (47 kDa, Protein from Enterobacteria phage T4)
- Escherichia virus t4 (Virus from Escherichia virus T4)
The capsid of Myoviridae Phage XM1
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7kmx
Q-score: 0.541
Wang Z, Fokine A, Guo X, Jiang W, Rossmann MG, Kuhn RJ, Luo ZH, Klose T
bioRxiv (2021) [ DOI: doi:10.1101/2021.12.18.469577 ]
- Major capsid protein (35 kDa, Protein from Vibrio phage XM1)
- Vibrio phage xm1 (Virus from Vibrio phage XM1)
- Minor capsid protein (16 kDa, Protein from Vibrio phage XM1)
The mature Usutu SAAR-1776, Map A
Resolution: 2.42 Å
EM Method: Single-particle
Fitted PDBs: 7lcg
Q-score: 0.558
Khare B, Klose T, Fang Q, Rossmann MG, Kuhn RJ
PNAS (2021) 118 [ Pubmed: 34417300 DOI: doi:10.1073/pnas.2107408118 ]
- (7s)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- Membrane protein m (8 kDa, Protein from Usutu virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope protein e (53 kDa, Protein from Usutu virus)
- Trimethyl-[2-[[(2s,3s)-2-(octadecanoylamino)-3-oxidanyl-butoxy]-oxidanyl-phosphoryl]oxyethyl]azanium (537 Da, Ligand)
- Usutu virus (Virus from Usutu virus)
The mature Usutu SAAR-1776, Map B
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7lch
Q-score: 0.631
Khare B, Klose T, Fang Q, Rossmann MG, Kuhn RJ
PNAS (2021) 118 [ Pubmed: 34417300 DOI: doi:10.1073/pnas.2107408118 ]
- (7s)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- Membrane protein m (8 kDa, Protein from Usutu virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope protein e (53 kDa, Protein from Usutu virus)
- Trimethyl-[2-[[(2s,3s)-2-(octadecanoylamino)-3-oxidanyl-butoxy]-oxidanyl-phosphoryl]oxyethyl]azanium (537 Da, Ligand)
- Usutu virus (Virus from Usutu virus)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7kcr
Q-score: 0.436
Sevvana M, Rogers TF, Miller AS, Long F, Klose T, Beutler N, Lai YC, Parren M, Walker LM, Buda G, Burton DR, Rossmann MG, Kuhn RJ
Viruses (2020) 12 [ Pubmed: 33255202 DOI: doi:10.3390/v12121346 ]
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Virus from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Zika virus in complex with monoclonal antibody adi30056 (15 MDa, Complex)
- Adi30056 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- Adi30056 fab heavy chain variable region (13 kDa, Protein from Homo sapiens)
- Envelope protein e (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Membrane protein m (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Monoclonal antibody adi30056 (Complex from Homo sapiens)
Native Mayaro virus cryo EM map, resolution 4.8 Angstroms
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 6w2u
Q-score: 0.439
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699- [ DOI: doi:10.1016/j.chom.2020.07.008 Pubmed: 32783883 ]
- Spike glycoprotein e1 (41 kDa, Protein from Mayaro virus (strain Brazil))
- Mayaro virus (Complex from Mayaro virus)
- Native mayaro virus (Complex)
- Spike glycoprotein e2 (38 kDa, Protein from Mayaro virus (strain Brazil))
Resolution: 6.33 Å
EM Method: Single-particle
Fitted PDBs: 6vyv
Q-score: 0.339
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699-711.e7 [ DOI: doi:10.1016/j.chom.2020.07.008 Pubmed: 32783883 ]
- E1 glycoprotein (42 kDa, Protein from Ross river virus (strain T48))
- Ross river virus (strain t48) (Virus from Ross river virus (strain T48))
- Fab chk-265 light chain (22 kDa, Protein from Homo sapiens)
- Fab chk-265 heavy chain (23 kDa, Protein from Homo sapiens)
- E2 glycoprotein (38 kDa, Protein from Ross river virus (strain T48))
Resolution: 5.3 Å
EM Method: Single-particle
Fitted PDBs: 6w09
Q-score: 0.34
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699-711.e7 [ DOI: doi:10.1016/j.chom.2020.07.008 Pubmed: 32783883 ]
- E2 glycoprotein (38 kDa, Protein from Chikungunya virus)
- Fab chk-265 light chain (22 kDa, Protein from Homo sapiens)
- Fab chk-265 (Complex from Homo sapiens)
- Chikungunya virus-fab complex (Complex)
- E3 (6 kDa, Protein from Chikungunya virus)
- E1 glycoprotein (42 kDa, Protein from Chikungunya virus)
- Chikungunya virus (Virus from Chikungunya virus)
- Fab chk-265 heavy chain (23 kDa, Protein from Homo sapiens)