Near-atomic structure of five-fold averaged PBCV-1 capsid
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8h2i
Q-score: 0.362
Shao Q, Agarkova IV, Noel EA, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q
Nat Commun (2022) 13 pp. 6476-6476 [ Pubmed: 36309542 DOI: doi:10.1038/s41467-022-34218-4 ]
- P1v1 (57 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Paramecium bursaria chlorella virus 1 (Virus from Paramecium bursaria Chlorella virus 1)
- P13 (11 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P21 (141 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Major capsid protein (mcp) (48 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P2 (63 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P15 (18 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P9 (23 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P23 (140 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv4 (45 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P17 (9 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P5 (16 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv1 (58 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P6 (24 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P19 (43 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P11 (23 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv5 (45 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P3 (19 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P22 (137 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P18 (16 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P4 (20 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P12 (17 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P20 (137 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv3 (45 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P8 (19 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P16 (9 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv2 (55 kDa, Protein from Paramecium bursaria Chlorella virus 1)
The unexpanded head structure of phage T4
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 7vrt
Q-score: 0.202
Fang Q, Tang WC, Fokine A, Mahalingam M, Shao Q, Rossmann MG, Rao VB
PNAS (2022) 119 pp. e2203272119-e2203272119 [ Pubmed: 36161892 DOI: doi:10.1073/pnas.2203272119 ]
- Major capsid protein (56 kDa, Protein from Enterobacteria phage T4)
- Capsid vertex protein (47 kDa, Protein from Enterobacteria phage T4)
- Escherichia virus t4 (Virus from Escherichia virus T4)
The expanded head structure of phage T4
Fang Q, Tang WC, Fokine A, Mahalingam M, Shao Q, Rossmann MG, Rao VB
PNAS (2022) 119 pp. e2203272119-e2203272119 [ Pubmed: 36161892 DOI: doi:10.1073/pnas.2203272119 ]
- Small outer capsid protein (9 kDa, Protein from Enterobacteria phage T4)
- Major capsid protein (56 kDa, Protein from Enterobacteria phage T4)
- Capsid vertex protein (47 kDa, Protein from Enterobacteria phage T4)
- Escherichia virus t4 (Virus from Escherichia virus T4)
Late pre-fusion state of EEEV (pH 5.5) with localized reconstruction
Resolution: 14.1 Å
EM Method: Single-particle
Fitted PDBs: 7n69
Q-score: 0.081
Chen CL, Klose T, Sun C, Kim AS, Buda G, Rossmann MG, Diamond MS, Klimstra WB, Kuhn RJ
PNAS (2022) 119 pp. e2114119119-e2114119119 [ DOI: doi:10.1073/pnas.2114119119 Pubmed: 35867819 ]
Early pre-fusion state of EEEV (pH 5.5) with localized reconstruction
Resolution: 14.3 Å
EM Method: Single-particle
Fitted PDBs: 7n6a
Q-score: 0.069
Chen CL, Klose T, Sun C, Kim AS, Buda G, Rossmann MG, Diamond MS, Klimstra WB, Kuhn RJ
PNAS (2022) 119 pp. e2114119119-e2114119119 [ DOI: doi:10.1073/pnas.2114119119 Pubmed: 35867819 ]
The capsid of Myoviridae Phage XM1
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7kmx
Q-score: 0.541
Wang Z, Fokine A, Guo X, Jiang W, Rossmann MG, Kuhn RJ, Luo ZH, Klose T
bioRxiv (2021) [ DOI: doi:10.1101/2021.12.18.469577 ]
- Major capsid protein (35 kDa, Protein from Vibrio phage XM1)
- Vibrio phage xm1 (Virus from Vibrio phage XM1)
- Minor capsid protein (16 kDa, Protein from Vibrio phage XM1)
Native Mayaro virus cryo EM map, resolution 4.8 Angstroms
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 6w2u
Q-score: 0.439
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699- [ DOI: doi:10.1016/j.chom.2020.07.008 Pubmed: 32783883 ]
- Spike glycoprotein e1 (41 kDa, Protein from Mayaro virus (strain Brazil))
- Mayaro virus (Complex from Mayaro virus)
- Native mayaro virus (Complex)
- Spike glycoprotein e2 (38 kDa, Protein from Mayaro virus (strain Brazil))
Resolution: 6.33 Å
EM Method: Single-particle
Fitted PDBs: 6vyv
Q-score: 0.339
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699-711.e7 [ DOI: doi:10.1016/j.chom.2020.07.008 Pubmed: 32783883 ]
- E1 glycoprotein (42 kDa, Protein from Ross river virus (strain T48))
- Ross river virus (strain t48) (Virus from Ross river virus (strain T48))
- Fab chk-265 light chain (22 kDa, Protein from Homo sapiens)
- Fab chk-265 heavy chain (23 kDa, Protein from Homo sapiens)
- E2 glycoprotein (38 kDa, Protein from Ross river virus (strain T48))
Resolution: 5.3 Å
EM Method: Single-particle
Fitted PDBs: 6w09
Q-score: 0.34
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699-711.e7 [ DOI: doi:10.1016/j.chom.2020.07.008 Pubmed: 32783883 ]
- E2 glycoprotein (38 kDa, Protein from Chikungunya virus)
- Fab chk-265 light chain (22 kDa, Protein from Homo sapiens)
- Fab chk-265 (Complex from Homo sapiens)
- Chikungunya virus-fab complex (Complex)
- E3 (6 kDa, Protein from Chikungunya virus)
- E1 glycoprotein (42 kDa, Protein from Chikungunya virus)
- Chikungunya virus (Virus from Chikungunya virus)
- Fab chk-265 heavy chain (23 kDa, Protein from Homo sapiens)
Resolution: 5.3 Å
EM Method: Single-particle
Fitted PDBs: 6w1c
Q-score: 0.35
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699-711.e7 [ DOI: doi:10.1016/j.chom.2020.07.008 Pubmed: 32783883 ]
- Mayaro virus-fab chk-265 complex (Complex)
- Mayaro virus (Virus from Mayaro virus)
- E2 glycoprotein (38 kDa, Protein from Mayaro virus (strain Brazil))
- Fab chk-265 light chain (22 kDa, Protein from Homo sapiens)
- Fab chk-265 (Complex from Homo sapiens)
- E1 glycoprotein (41 kDa, Protein from Mayaro virus (strain Brazil))
- Fab chk-265 heavy chain (23 kDa, Protein from Homo sapiens)