FIB-SEM datasets of hippocampal neurons from WT and FAM92A1 knockout mice
Wang L, Yang Z, Satoshi F, Prasanna X, Yan Z, Vihinen H, Chen Y, Zhao Y, He X, Bu Q, Li H, Zhao Y, Jiang L, Qin F, Dai Y, Zhang N, Qin M, Kuang W, Zhao Y, Jokitalo E, Vattulainen I, Kajander T, Zhao H, Cen X
Nat Commun (2024) 15 [ DOI: 10.1038/s41467-024-50565-w Pubmed: 39043703 ]
Image sets:
- FIB-SEM dataset of WT mouse hippocampal neurons (DG region)
- FIB-SEM dataset of hippocampal neurons (DG region) from FAM92A1 KO mouse
- raw FIB-SEM dataset of hippocampal neurons (DG region) from FAM92A1 KO mouse
- raw FIB-SEM dataset of WT mouse hippocampal neurons (DG region)
Velazco A, Glen T, Klumpe S, Pennington A, Zhang J, Smith J, Glynn C, Bowles W, Kobylynska M, Fleck RA, Naismith JH, Kim JS, Darrow MC, Grange M, Kirkland AI
To Be Published
Image sets:
Interleaved scanning electron microscopy: exploring native samples at the mesoscale. E.gracilis
Velazco A, Glen T, Klumpe S, Pennington A, Zhang J, Smith J, Bowles W, Glynn C, Kobylynska M, Fleck RA, Naismith JH, Kim JS, Darrow MC, Grange M, Kirkland AI
To Be Published
Image sets:
Comparative 3D ultrastructure of Plasmodium falciparum gametocytes
Evers F, Roverts R, Boshoven C, Kea-te Lindert M, Verhoef JM, Sinden RE, Akiva A, Kooij TW
bioRxiv (2023) [ DOI: 10.1101/2023.03.10.531920 ]
Image sets:
- Pf_Gametocyte_#14
- Pf_Gametocyte_#3
- Pf_Gametocyte_#1
- Pf_Gametocyte_#16
- Sample6_UnprocessedStack_Inlens_P1
- Pf_Gametocyte_#6
- Pf_Gametocyte_#13
- Gametocytes #20-#50
- Pf_Gametocyte_#4
- Pf_Gametocyte_#18
- Pf_Gametocyte_#8
- Pf_Gametocyte_#9
- Pf_Gametocyte_#10
- Raw Image Stack Gametocyte Sample 1
- Raw Image Stack Gametocyte Sample 2
- Pf_Gametocyte_#15
- Sample6_UnprocessedStack_InLens_P2
- Pf_Schizont_#1
- Pf_Gametocyte_#5
- Pf_Gametocyte_#2
- Pf_Gametocyte_#19
- Pf_Schizont_#12
- Pf_Gametocyte_#11
- Sample6_UnprocessedStack_InLens_P3
- Aligned Serial Sectioning Image Stack Gametocytes
- Raw Image Stack Gametocyte Sample 3
- Pf_Gametocyte_#7
Parlakgül G, Pang S, Artico LL, Min N, Cagampan E, Villa R, Goncalves RLS, Lee GY, Xu CS, Hotamışlıgil GS, Arruda AP
Nat Commun (2024) 15 [ Pubmed: 38729945 DOI: 10.1038/s41467-024-48272-7 ]
Image sets:
- 8970 Obese Fasted Liver Dataset - FIB-SEM and Segmentations
- 6464 Obese Fed Liver Dataset - Mitochondria instance segmentations
- 1931 - Periportal Liver Dataset - FIB-SEM images
- 9428 Lean Fasted Liver Dataset - FIB-SEM and Segmentations
- 2679 Obese LacZ Liver Dataset - FIB-SEM and Segmentations
- 6461 Lean Fed Liver Dataset - Mitochondria instance segmentations
- 1931 - Pericentral Liver Dataset - FIB-SEM images
- 1858 Obese RRBP1 (p180) Liver Dataset - FIB-SEM and Segmentations
FIB-SEM dataset of a human bone osteosarcoma epithelial cell (U2-OS)
Czymmek KJ, Belevich I, Bischof J, Mathur A, Collinson L, Jokitalo E
Nature cell biology (2024) 26 pp. 498-503 [ DOI: 10.1038/s41556-024-01381-3 Pubmed: 38609529 ]
Image sets:
In situ cryo-ET structure of phycobilisome–photosystem II supercomplex from red alga
Meijing Li ML, Jianfei Ma JM, Xueming Li XL, Senfang Sui SS
eLife (2021) [ Pubmed: 34515634 DOI: 10.7554/eLife.69635 ]
Image sets:
Quantitative subcellular reconstruction reveals a lipid mediated inter-organelle biogenesis network
Lee RG, Rudler DL, Raven SA, Peng L, Chopin A, Moh ESX, McCubbin T, Siira SJ, Fagan SV, DeBono NJ, Stentenbach M, Browne J, Rackham FF, Li J, Simpson KJ, Marcellin E, Packer NH, Reid GE, Padman BS, Rackham O, Filipovska A
Nature cell Biology ()
Image sets:
- AIVE outputs generated from FIB-SEM data of Cal51 SEC61A2ko cells (Sample E)
- Preprocessed inputs for AIVE (AI-directed Voxel Extraction) of Cal51 PEX26ko cells (Sample B)
- Unprocessed FIB-SEM slices acquired from Cal51 SEC62ko cells (Sample F)
- Unprocessed FIB-SEM slices acquired from Cal51 PEX26ko cells (Sample B)
- AIVE outputs generated from FIB-SEM data of Cal51 PEX26ko cells (Sample B)
- AIVE outputs generated from FIB-SEM data of Cal51 GOLGA5ko cells (Sample C)
- Unprocessed FIB-SEM slices acquired from Cal51 GOLGA8Mko cells (Sample D)
- AIVE outputs generated from FIB-SEM data of Cal51 wt cells (Sample A).
- Unprocessed FIB-SEM slices acquired from Cal51 GOLGA5ko cells (Sample C)
- Unprocessed FIB-SEM slices acquired from Cal51 wt cells (Sample A)
- Preprocessed inputs for AIVE (AI-directed Voxel Extraction) of Cal51 GOLGA8Mko cells (Sample D)
- AIVE outputs generated from FIB-SEM data of Cal51 GOLGA8Mko cells (Sample D)
- Unprocessed FIB-SEM slices acquired from Cal51 SEC61A2ko cells (Sample E)
- Preprocessed inputs for AIVE (AI-directed Voxel Extraction) of Cal51 SEC61A2ko cells (Sample E)
- Preprocessed inputs for AIVE (AI-directed Voxel Extraction) of Cal51 SEC62ko cells (Sample F)
- AIVE outputs generated from FIB-SEM data of Cal51 SEC62ko cells (Sample F)
- Preprocessed inputs for AIVE (AI-directed Voxel Extraction) of Cal51 GOLGA5ko cells (Sample C)
- Preprocessed inputs for AIVE (AI-directed Voxel Extraction) of Cal51 wt cells (Sample A)
Adaptive traits of cysts of the snow alga Sanguina nivaloides unveiled by 3D subcellular imaging
Ezzedine J, Uwizeye C, Si Larbi G, Villain G, Louwagie M, Schilling M, Hagenmuller P, Gallet B, Stewart A, Petroutsos D, Devime F, Salze P, Liger L, Jouhet J, Dumont M, Ravanel S, Amato A, Valay JG, Jouneau PH, Falconet D, Marechal E
Research Square (2023) [ DOI: 10.21203/rs.3.rs-3038444/v1 ]
Image sets: