SA11 Rotavirus Non-tripsinized Triple Layered Particle
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8olb
Q-score: 0.059
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Rotavirus a (92 MDa, Virus from Rotavirus A)
- Calcium ion (40 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Inner capsid protein vp2 (102 kDa, Protein from Rotavirus)
SA11 Rotavirus Trypsinized Triple Layered Particle
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8olc
Q-score: 0.289
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Rotavirus a (92 MDa, Virus from Rotavirus A)
- Calcium ion (40 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Inner capsid protein vp2 (102 kDa, Protein from Rotavirus)
Cryo-EM reconstruction of VP4 assembly from SA11 Rotavirus Non-Tripsinized Triple Layered Particle
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8ole
Q-score: 0.117
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus)
- Rotavirus a (92 MDa, Virus from Rotavirus A)
Cryo-EM reconstruction of VP5*/VP8* assembly from SA11 Rotavirus Tripsinized Triple Layered Particle
Resolution: 4.27 Å
EM Method: Single-particle
Fitted PDBs: 8qtz
Q-score: 0.326
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus)
- Rotavirus a (92 MDa, Virus from Rotavirus A)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ums
Q-score: 0.493
Jenni S, Li Z, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC
J Virol (2022) 96 pp. e0062722-e0062722 [ Pubmed: 35924923 DOI: doi:10.1128/jvi.00627-22 ]
- Outer capsid protein vp8* (26 kDa, Protein from Rotavirus)
- Rotavirus (Virus from Rotavirus)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Fab 41 heavy chain (25 kDa, Protein from Homo sapiens)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- Fab 41 (Complex from Homo sapiens)
- Fab 41 light chain (23 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rotavirus with fab bound (Complex)
- Outer capsid protein vp5* (59 kDa, Protein from Rotavirus)
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7umt
Q-score: 0.52
Jenni S, Li Z, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC
J Virol (2022) 96 pp. e0062722-e0062722 [ Pubmed: 35924923 DOI: doi:10.1128/jvi.00627-22 ]
- Rotavirus (Virus from Rotavirus)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Outer capsid protein vp5* (59 kDa, Protein from Rotavirus)
CryoEM structure of Rotavirus NSP2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7pko
Q-score: 0.442
Bravo JPK, Bartnik K, Venditti L, Acker J, Gail EH, Colyer A, Davidovich C, Lamb DC, Tuma R, Calabrese AN, Borodavka A
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2100198118 Pubmed: 34615715 ]
- Non-structural protein 2 (36 kDa, Protein from Rotavirus A)
- Rotavirus nsp2 rnp complex (Complex from Rotavirus)
NSP2 RNP Complex focused 3D class with substrate density
Bravo JPK, Bartnik K, Venditti L, Acker J, Gail EH, Colyer A, Davidovich C, Lamb DC, Tuma R, Calabrese AN, Borodavka A
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2100198118 Pubmed: 34615715 ]
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7pkp
Q-score: 0.551
Bravo JPK, Bartnik K, Venditti L, Acker J, Gail EH, Colyer A, Davidovich C, Lamb DC, Tuma R, Calabrese AN, Borodavka A
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2100198118 Pubmed: 34615715 ]
- Non-structural protein 2 (36 kDa, Protein from Rotavirus A)
- Nsp2 rnp complex (Complex from Rotavirus)